diff options
Diffstat (limited to 'dev-python/scikit-image')
| -rw-r--r-- | dev-python/scikit-image/Manifest | 3 | ||||
| -rw-r--r-- | dev-python/scikit-image/metadata.xml | 15 | ||||
| -rw-r--r-- | dev-python/scikit-image/scikit-image-0.26.0-r1.ebuild | 108 |
3 files changed, 126 insertions, 0 deletions
diff --git a/dev-python/scikit-image/Manifest b/dev-python/scikit-image/Manifest new file mode 100644 index 000000000000..e26c0bbaf727 --- /dev/null +++ b/dev-python/scikit-image/Manifest @@ -0,0 +1,3 @@ +DIST scikit-image-data-5c090b56df3988d988ff97928e2ef2d2cbe38e1b.tar.bz2 156723295 BLAKE2B fb30104cfa823361f4306606b64b23c8aed349767c1bf86aa3ee8c17d3d593c2ffda7b2f0baabd1e856407d342fbbca9d485e897ec3c219b79dae2a059457604 SHA512 69107940bfcafc6e056192b718065d74fbaa7c5c9da78a2789cc55c24e51b6d4d936dded07c71dbb8dcedf409faa4e97bea3ae0f5c873c936767979102eedc3e +DIST scikit_image-0.26.0.tar.gz 22729739 BLAKE2B 3c2b9c0a0de449e6ac41e9b7e4c26fd21a59402e6cf58280923bf5ea4e98cd8287371bb01e184626ac2948b24872d6f8865a6f566c1fc4a5880e4ef139ff0e46 SHA512 30df4fa366d6f9b936f62247734ea26992e6d9af60390cf4bb9d87665dcfb395d27b67a52bf1a89d01ed4fa8dd56357a199201feacd5181c7e7f363a2c898cc5 +DIST scikit_image-0.26.0.tar.gz.provenance 9692 BLAKE2B 299f3097d71aa3261de38b6fbf38db91bdad84e95ba09dca7aef754d925b6013fbf7d0cc0426883ce5d3d9df9058ad890cb4ec014b7fb6e383512f4d41aa48cc SHA512 8cf6fbc4afae139135707abfb7d77221d68318cfb9358c3119cea05fadf5d10064b1843a7e07010b4af67feb163962d67d9ecbb8f4fee907fdfe17ce14c8b57d diff --git a/dev-python/scikit-image/metadata.xml b/dev-python/scikit-image/metadata.xml new file mode 100644 index 000000000000..03dad179264c --- /dev/null +++ b/dev-python/scikit-image/metadata.xml @@ -0,0 +1,15 @@ +<?xml version="1.0" encoding="UTF-8"?> +<!DOCTYPE pkgmetadata SYSTEM "https://docs.baldeagleos.com/dtd/metadata.dtd"> +<pkgmetadata> + <maintainer type="project"> + <email>sci@gentoo.org</email> + <name>Gentoo Science Project</name> + </maintainer> + <longdescription lang="en"> + This SciKit (toolkit for SciPy) includes useful image processing + algorithms for use with Python and NumPy. While SciPy’s ndimage + provides low-level manipulation, scikits.image centres around + algorithms and applications. + </longdescription> + <origin>baldeagleos-repo</origin> +</pkgmetadata> diff --git a/dev-python/scikit-image/scikit-image-0.26.0-r1.ebuild b/dev-python/scikit-image/scikit-image-0.26.0-r1.ebuild new file mode 100644 index 000000000000..5960f662da5b --- /dev/null +++ b/dev-python/scikit-image/scikit-image-0.26.0-r1.ebuild @@ -0,0 +1,108 @@ +# Copyright 1999-2026 Gentoo Authors +# Distributed under the terms of the GNU General Public License v2 + +EAPI=8 + +DISTUTILS_USE_PEP517=meson-python +DISTUTILS_EXT=1 +PYPI_VERIFY_REPO=https://github.com/scikit-image/scikit-image +PYTHON_COMPAT=( python3_{13..14} ) + +inherit distutils-r1 optfeature pypi + +# the package refers to blobs directly, use the newest commit to get +# them all +TEST_DATA_COMMIT=5c090b56df3988d988ff97928e2ef2d2cbe38e1b +DESCRIPTION="Image processing routines for SciPy" +HOMEPAGE=" + https://scikit-image.org/ + https://github.com/scikit-image/scikit-image/ + https://pypi.org/project/scikit-image/ +" +SRC_URI+=" + test? ( + https://gitlab.com/scikit-image/data/-/archive/${TEST_DATA_COMMIT}/scikit-image-data-${TEST_DATA_COMMIT}.tar.bz2 + ) +" + +LICENSE="BSD" +SLOT="0" +if [[ ${PV} != *_rc* ]]; then + KEYWORDS="~amd64 ~arm64 ~x86" +fi + +RDEPEND=" + >=dev-python/imageio-2.36[${PYTHON_USEDEP}] + >=dev-python/lazy-loader-0.4[${PYTHON_USEDEP}] + >=dev-python/networkx-3.0[${PYTHON_USEDEP}] + >=dev-python/numpy-1.24[${PYTHON_USEDEP}] + >=dev-python/pillow-10.1[${PYTHON_USEDEP}] + >=dev-python/scipy-1.11.4[sparse(+),${PYTHON_USEDEP}] + >=dev-python/tifffile-2022.8.12[${PYTHON_USEDEP}] +" +DEPEND=" + ${RDEPEND} + dev-python/pythran[${PYTHON_USEDEP}] +" +BDEPEND=" + >=dev-python/cython-3.0.4[${PYTHON_USEDEP}] + dev-python/packaging[${PYTHON_USEDEP}] + dev-python/pythran[${PYTHON_USEDEP}] +" + +# xdist does not work with this test suite +EPYTEST_PLUGINS=( pytest-localserver ) +distutils_enable_tests pytest +# There is a programmable error in your configuration file: +#distutils_enable_sphinx doc/source dev-python/numpydoc dev-python/myst-parser + +src_test() { + # just useless formatter replacement + rm tests/conftest.py || die + + # for some reason, upstream refetches data that's already in the tarball + # sigh + mkdir -p "${HOME}/.cache/scikit-image" || die + mv src/skimage "${HOME}/.cache/scikit-image/${PV/_/}" || die + + # This is a true horror, sigh + local cache_dir=${HOME}/.cache/scikit-image/${PV/_/}/data + pushd "${WORKDIR}/data-${TEST_DATA_COMMIT}" >/dev/null || die + cp Tests_besides_Equalize_Otsu/add18_entropy/rank_filters_tests_3d.npz \ + Tests_besides_Equalize_Otsu/gray_morph_output.npz \ + brain.tiff cells3d.tif eagle.png \ + "${cache_dir}/" || die + cp Normal_Epidermis_and_Dermis_with_Intradermal_Nevus_10x.JPG "${cache_dir}"/skin.jpg || die + cp pivchallenge/B/B001_1.tif "${cache_dir}"/pivchallenge-B-B001_1.tif || die + cp pivchallenge/B/B001_2.tif "${cache_dir}"/pivchallenge-B-B001_2.tif || die + cp kidney-tissue-fluorescence.tif "${cache_dir}"/kidney.tif || die + cp lily-of-the-valley-fluorescence.tif "${cache_dir}"/lily.tif || die + cp astronaut_rl.npy "${cache_dir}/../restoration/" || die + popd > /dev/null || die + + distutils-r1_src_test +} + +python_test() { + local EPYTEST_DESELECT=( + # tests for downloading all data files, including these not needed + # by any actual tests + tests/skimage/data/test_data.py::test_download_all_with_pooch + + # random deprecation warnings + tests/skimage/io/test_pil.py::test_all_color + tests/skimage/io/test_pil.py::test_all_mono + 'tests/skimage/io/test_plugin.py::test_deprecation_warnings_on_plugin_funcs[call_plugin-args1]' + ) + + epytest +} + +pkg_postinst() { + optfeature "FITS io capability" dev-python/astropy + optfeature "GTK" dev-python/pygtk + optfeature "io plugin providing most standard formats" dev-python/imread + optfeature "plotting" dev-python/matplotlib + optfeature "wavelet transformations" dev-python/pywavelets + optfeature "io plugin providing a wide variety of formats, including specialized formats using in medical imaging." dev-python/simpleitk +} |
