Adding metadata

16 files changed, 33 insertions, 121 deletions

diff --git a/sci-visualization/fig2sxd/fig2sxd-0.23.ebuild b/sci-visualization/fig2sxd/fig2sxd-0.23.ebuild
index f1f528a263fa..8cc6c5bb8ddb 100644
--- a/sci-visualization/fig2sxd/fig2sxd-0.23.ebuild
+++ b/sci-visualization/fig2sxd/fig2sxd-0.23.ebuild
@@ -1,4 +1,4 @@
-# Copyright 1999-2024 Gentoo Authors
+# Copyright 1999-2025 Gentoo Authors
 # Distributed under the terms of the GNU General Public License v2
 
 EAPI=8
@@ -14,7 +14,7 @@ LICENSE="GPL-2"
 SLOT="0"
 KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux ~ppc-macos"
 
-DEPEND="sys-libs/zlib:="
+DEPEND="virtual/zlib:="
 RDEPEND="${DEPEND}"
 
 DOCS=( README.md changelog )
diff --git a/sci-visualization/gle/files/gle-4.3.8.patch b/sci-visualization/gle/files/gle-4.3.8-r1.patch
index 5650a62ab5ad..31d7f97f62f4 100644
--- a/sci-visualization/gle/files/gle-4.3.8.patch
+++ b/sci-visualization/gle/files/gle-4.3.8-r1.patch
@@ -6,7 +6,7 @@ diff '--color=auto' -r -U3 src.orig/CMakeLists.txt src/CMakeLists.txt
  # -- CMakeLists.txt for GLE - Graphics Layout Engine
  #
 -cmake_minimum_required (VERSION 3.30)
-+cmake_minimum_required (VERSION 3.50)
++cmake_minimum_required (VERSION 3.31)
  cmake_policy(SET CMP0091 NEW) 	# windows static runtimes selection
  #cmake_policy(SET CMP0167 NEW)	# The FindBoost module is removed. only for cmake 3.30 and later live with the warning for now
  cmake_policy(SET CMP0074 NEW)	# uses <PackageName>_ROOT variables.
@@ -15,7 +15,7 @@ diff '--color=auto' -r -U3 src.orig/CMakeLists.txt src/CMakeLists.txt
  set(CMAKE_CXX_STANDARD_REQUIRED ON)
  include(CheckIncludeFile)
 @@ -595,18 +596,17 @@
- 
+
  # documentation file installation in doc folder
  install(FILES
 -	../doc/LICENSE.txt
@@ -48,22 +48,22 @@ diff '--color=auto' -r -U3 src.orig/fonts/CMakeLists.txt src/fonts/CMakeLists.tx
 --- src.orig/fonts/CMakeLists.txt	2025-10-05 20:31:58.000000000 +0700
 +++ src/fonts/CMakeLists.txt	2025-10-13 11:25:22.307477179 +0700
 @@ -310,5 +310,5 @@
- 	${FMT_FILES} 
+ 	${FMT_FILES}
  	${FVE_FILES}
  	CONFIGURATIONS Release Debug
 -	DESTINATION font)
 +	DESTINATION ./share/gle/font)
- 
+
 diff '--color=auto' -r -U3 src.orig/gle/CMakeLists.txt src/gle/CMakeLists.txt
 --- src.orig/gle/CMakeLists.txt	2025-10-05 20:31:58.000000000 +0700
 +++ src/gle/CMakeLists.txt	2025-10-13 11:39:25.134159818 +0700
 @@ -1,3 +1,4 @@
 +cmake_policy(SET CMP0177 NEW)	# normalize DESTINATION paths
- 
+
  set(GLE_SOURCES
  	bitmap/img2ps.cpp
 @@ -129,10 +130,10 @@
- 
+
  if(ZSTD_FOUND)
  	target_link_libraries ( gle LINK_PUBLIC
 - 		zstd::libzstd_static
@@ -74,14 +74,14 @@ diff '--color=auto' -r -U3 src.orig/gle/CMakeLists.txt src/gle/CMakeLists.txt
 + 		zstd::libzstd_shared
   	)
  endif()
- 
+
 @@ -201,5 +202,5 @@
- 
+
  install(FILES ${CMAKE_CURRENT_BINARY_DIR}/glerc
  		CONFIGURATIONS Release Debug
 -		DESTINATION . )
 +		DESTINATION ./share/gle )
- 
+
 diff '--color=auto' -r -U3 src.orig/gui/CMakeLists.txt src/gui/CMakeLists.txt
 --- src.orig/gui/CMakeLists.txt	2025-10-05 20:31:58.000000000 +0700
 +++ src/gui/CMakeLists.txt	2025-10-13 11:40:02.467493862 +0700
@@ -93,7 +93,7 @@ diff '--color=auto' -r -U3 src.orig/gui/CMakeLists.txt src/gui/CMakeLists.txt
 + 		zstd::libzstd_shared
   	)
  endif()
- 
+
 diff '--color=auto' -r -U3 src.orig/TeX/CMakeLists.txt src/TeX/CMakeLists.txt
 --- src.orig/TeX/CMakeLists.txt	2025-10-05 20:31:58.000000000 +0700
 +++ src/TeX/CMakeLists.txt	2025-10-13 12:42:14.357564475 +0700
@@ -120,7 +120,7 @@ diff '--color=auto' -r -U3 src.orig/TeX/CMakeLists.txt src/TeX/CMakeLists.txt
 @@ -40,6 +40,8 @@
   	COMMAND_EXPAND_LISTS
  )
- 
+
 +cmake_policy(SET CMP0177 NEW)	# normalize DESTINATION paths
 +
  add_custom_target(inittex ALL
@@ -133,5 +133,5 @@ diff '--color=auto' -r -U3 src.orig/TeX/CMakeLists.txt src/TeX/CMakeLists.txt
 -  	DESTINATION .
 +  	DESTINATION ./share/gle
  )
- 
- 
+
+
diff --git a/sci-visualization/gle/gle-4.3.8.ebuild b/sci-visualization/gle/gle-4.3.8-r1.ebuild
index 00991b0bea38..f75047d6e6a2 100644
--- a/sci-visualization/gle/gle-4.3.8.ebuild
+++ b/sci-visualization/gle/gle-4.3.8-r1.ebuild
@@ -24,7 +24,7 @@ DEPEND="app-text/ghostscript-gpl
 	media-libs/libjpeg-turbo
 	media-libs/libpng
 	media-libs/tiff
-	sys-libs/zlib
+	virtual/zlib:=
 	x11-libs/cairo
 	x11-libs/pixman
 	gui? (
@@ -36,11 +36,12 @@ DEPEND="app-text/ghostscript-gpl
 	emacs? ( app-editors/emacs:* )"
 RDEPEND="${DEPEND}
 	virtual/latex-base"
-BDEPEND="kde-frameworks/extra-cmake-modules
+BDEPEND=">=dev-build/cmake-3.31
+	kde-frameworks/extra-cmake-modules
 	doc? ( virtual/latex-base )"
 
 PATCHES=(
-	"${FILESDIR}"/gle-4.3.8.patch
+	"${FILESDIR}"/gle-4.3.8-r1.patch
 	"${FILESDIR}"/top_dir.patch
 )
 SITEFILE="64${PN}-gentoo.el"
@@ -49,6 +50,8 @@ src_configure() {
 	# -Werror=odr
 	# https://bugs.gentoo.org/927779
 	# https://github.com/vlabella/GLE/issues/35
+	#
+	# fixed after 4.3.8 release. Recheck on next version bump.
 	filter-lto
 
 	local mycmakeargs=(
diff --git a/sci-visualization/gr/gr-0.73.6.ebuild b/sci-visualization/gr/gr-0.73.6.ebuild
index 8e55d4f9c9ba..e3d3a73e47a8 100644
--- a/sci-visualization/gr/gr-0.73.6.ebuild
+++ b/sci-visualization/gr/gr-0.73.6.ebuild
@@ -1,4 +1,4 @@
-# Copyright 2019-2024 Gentoo Authors
+# Copyright 2019-2025 Gentoo Authors
 # Distributed under the terms of the GNU General Public License v2
 
 EAPI=8
@@ -22,7 +22,7 @@ DEPEND="
 	media-libs/libpng:=
 	media-libs/qhull:=
 	net-libs/zeromq
-	sys-libs/zlib
+	virtual/zlib:=
 	virtual/opengl
 	x11-libs/libX11
 	x11-libs/libXt
diff --git a/sci-visualization/grace/grace-5.1.25_p17.ebuild b/sci-visualization/grace/grace-5.1.25_p17.ebuild
index 2e8a4182babb..6e02fb8268fd 100644
--- a/sci-visualization/grace/grace-5.1.25_p17.ebuild
+++ b/sci-visualization/grace/grace-5.1.25_p17.ebuild
@@ -1,4 +1,4 @@
-# Copyright 1999-2024 Gentoo Authors
+# Copyright 1999-2025 Gentoo Authors
 # Distributed under the terms of the GNU General Public License v2
 
 EAPI=8
@@ -21,7 +21,7 @@ IUSE="fftw fortran jpeg netcdf png"
 DEPEND="
 	media-libs/t1lib
 	media-libs/tiff:=
-	sys-libs/zlib
+	virtual/zlib:=
 	>=x11-libs/motif-2.3:0
 	x11-libs/xbae
 	fftw? ( sci-libs/fftw:3.0= )
diff --git a/sci-visualization/grace/grace-5.1.25_p18.ebuild b/sci-visualization/grace/grace-5.1.25_p18.ebuild
index 5592ae1f9938..eddde9d4a090 100644
--- a/sci-visualization/grace/grace-5.1.25_p18.ebuild
+++ b/sci-visualization/grace/grace-5.1.25_p18.ebuild
@@ -21,7 +21,7 @@ IUSE="fftw fortran jpeg netcdf png"
 DEPEND="
 	media-libs/t1lib
 	media-libs/tiff:=
-	sys-libs/zlib
+	virtual/zlib:=
 	>=x11-libs/motif-2.3:0
 	x11-libs/xbae
 	fftw? ( sci-libs/fftw:3.0= )
diff --git a/sci-visualization/gwyddion/gwyddion-2.67-r1.ebuild b/sci-visualization/gwyddion/gwyddion-2.67-r1.ebuild
index 426776c5f5ca..e4cb48b3e859 100644
--- a/sci-visualization/gwyddion/gwyddion-2.67-r1.ebuild
+++ b/sci-visualization/gwyddion/gwyddion-2.67-r1.ebuild
@@ -35,7 +35,7 @@ RDEPEND="
 	unique? ( dev-libs/libunique:3 )
 	sourceview? ( x11-libs/gtksourceview:2.0 )
 	xml? ( dev-libs/libxml2:2= )
-	zlib? ( sys-libs/zlib )
+	zlib? ( virtual/zlib:= )
 "
 
 DEPEND="${RDEPEND}"
diff --git a/sci-visualization/gwyddion/gwyddion-2.69.ebuild b/sci-visualization/gwyddion/gwyddion-2.69.ebuild
index 33e755fd22f8..b1608c67e30d 100644
--- a/sci-visualization/gwyddion/gwyddion-2.69.ebuild
+++ b/sci-visualization/gwyddion/gwyddion-2.69.ebuild
@@ -35,7 +35,7 @@ RDEPEND="
 	unique? ( dev-libs/libunique:3 )
 	sourceview? ( x11-libs/gtksourceview:2.0 )
 	xml? ( dev-libs/libxml2:2= )
-	zlib? ( sys-libs/zlib )
+	zlib? ( virtual/zlib:= )
 "
 
 DEPEND="${RDEPEND}"
diff --git a/sci-visualization/labplot/labplot-2.11.1-r1.ebuild b/sci-visualization/labplot/labplot-2.11.1-r1.ebuild
index 8cca41d72352..69c821a125ee 100644
--- a/sci-visualization/labplot/labplot-2.11.1-r1.ebuild
+++ b/sci-visualization/labplot/labplot-2.11.1-r1.ebuild
@@ -61,7 +61,7 @@ DEPEND="
 	origin? ( sci-libs/liborigin:2 )
 	root? (
 		app-arch/lz4
-		sys-libs/zlib
+		virtual/zlib:=
 	)
 	serial? ( >=dev-qt/qtserialport-${QTMIN}:6 )
 	share? ( >=kde-frameworks/purpose-${KFMIN}:6 )
diff --git a/sci-visualization/labplot/labplot-9999.ebuild b/sci-visualization/labplot/labplot-9999.ebuild
index e6e049ea8dab..685d556b1cb7 100644
--- a/sci-visualization/labplot/labplot-9999.ebuild
+++ b/sci-visualization/labplot/labplot-9999.ebuild
@@ -60,7 +60,7 @@ DEPEND="
 	origin? ( sci-libs/liborigin:2 )
 	root? (
 		app-arch/lz4
-		sys-libs/zlib
+		virtual/zlib:=
 	)
 	serial? ( >=dev-qt/qtserialport-${QTMIN}:6 )
 	share? ( >=kde-frameworks/purpose-${KFMIN}:6 )
diff --git a/sci-visualization/paraview/paraview-5.13.2-r2.ebuild b/sci-visualization/paraview/paraview-5.13.2-r2.ebuild
index ecb300fbd958..22ef9bfedcd5 100644
--- a/sci-visualization/paraview/paraview-5.13.2-r2.ebuild
+++ b/sci-visualization/paraview/paraview-5.13.2-r2.ebuild
@@ -47,7 +47,7 @@ RDEPEND="
 	sci-libs/hdf5:=[mpi=]
 	>=sci-libs/netcdf-4.2[hdf5]
 	>=sci-libs/netcdf-cxx-4.2:3
-	sys-libs/zlib
+	virtual/zlib:=
 	virtual/glu
 	media-libs/libjpeg-turbo:=
 	x11-libs/libX11
diff --git a/sci-visualization/paraview/paraview-5.13.3-r2.ebuild b/sci-visualization/paraview/paraview-5.13.3-r2.ebuild
index ecb300fbd958..22ef9bfedcd5 100644
--- a/sci-visualization/paraview/paraview-5.13.3-r2.ebuild
+++ b/sci-visualization/paraview/paraview-5.13.3-r2.ebuild
@@ -47,7 +47,7 @@ RDEPEND="
 	sci-libs/hdf5:=[mpi=]
 	>=sci-libs/netcdf-4.2[hdf5]
 	>=sci-libs/netcdf-cxx-4.2:3
-	sys-libs/zlib
+	virtual/zlib:=
 	virtual/glu
 	media-libs/libjpeg-turbo:=
 	x11-libs/libX11
diff --git a/sci-visualization/paraview/paraview-5.13.3-r3.ebuild b/sci-visualization/paraview/paraview-5.13.3-r3.ebuild
index 1d7f832f4015..23704f4a28ad 100644
--- a/sci-visualization/paraview/paraview-5.13.3-r3.ebuild
+++ b/sci-visualization/paraview/paraview-5.13.3-r3.ebuild
@@ -47,7 +47,7 @@ RDEPEND="
 	sci-libs/hdf5:=[mpi=]
 	>=sci-libs/netcdf-4.2[hdf5]
 	>=sci-libs/netcdf-cxx-4.2:3
-	sys-libs/zlib
+	virtual/zlib:=
 	virtual/glu
 	media-libs/libjpeg-turbo:=
 	x11-libs/libX11
diff --git a/sci-visualization/veusz/Manifest b/sci-visualization/veusz/Manifest
index e4fcb1238972..3385b9f373e2 100644
--- a/sci-visualization/veusz/Manifest
+++ b/sci-visualization/veusz/Manifest
@@ -1,2 +1 @@
-DIST veusz-3.6.2.tar.gz 3330225 BLAKE2B dacadb7f4a4059cab02c07d2af4e53ba3b5714593233ff2995083237416e26425723950603dc542ac58cc355aaf6106c3fd4065efddb9cc7884757e440d3efa2 SHA512 5580171c0259415cf3de11322133fde02e244b65ffede1e83b5e6d17c8a037624860550495dc0b53c7b5e2f65b3ae6b95daa0e95f7164358e1201ffedeb13f51
 DIST veusz-4.0.tar.gz 3429227 BLAKE2B 213216354f9053df4015e95d098af667c9da6bcc3d384b5fe9e4325d4cc4f9b7520271e80ce092f6768fbf25b120f644164aafc3aa1eb1dc3685dd1e94d6582b SHA512 39d336ed59c4a68ae9ebbaaff37fd61788932a62debd076567acc854b69847bfa0d1e5801029ed785d00becbf3c7451e3ce80966c68d9f24f101a7ddb69b8059
diff --git a/sci-visualization/veusz/files/tomli.patch b/sci-visualization/veusz/files/tomli.patch
deleted file mode 100644
index bada3abcfdc5..000000000000
--- a/sci-visualization/veusz/files/tomli.patch
+++ /dev/null
@@ -1,17 +0,0 @@
-diff '--color=auto' -r -U2 veusz-3.6.2.orig/pyqt_setuptools.py veusz-3.6.2/pyqt_setuptools.py
---- veusz-3.6.2.orig/pyqt_setuptools.py	2023-02-25 16:47:30.000000000 +0700
-+++ veusz-3.6.2/pyqt_setuptools.py	2025-05-05 20:37:20.190868091 +0700
-@@ -9,5 +9,5 @@
- import shutil
- import subprocess
--import tomli
-+import tomllib
- 
- from sysconfig import get_path
-@@ -231,5 +231,5 @@
-         pyqt5_toml = os.path.join(pyqt5_include_dir, 'QtCore', 'QtCore.toml')
-         with open(pyqt5_toml, 'rb') as fin:
--            pyqt5_cfg = tomli.load(fin)
-+            pyqt5_cfg = tomllib.load(fin)
-         abi_version = pyqt5_cfg.get('sip-abi-version')
- 
diff --git a/sci-visualization/veusz/veusz-3.6.2-r3.ebuild b/sci-visualization/veusz/veusz-3.6.2-r3.ebuild
deleted file mode 100644
index bc6e70dbb6ce..000000000000
--- a/sci-visualization/veusz/veusz-3.6.2-r3.ebuild
+++ /dev/null
@@ -1,73 +0,0 @@
-# Copyright 1999-2025 Gentoo Authors
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=8
-
-PYTHON_COMPAT=( python3_{10..14} )
-DISTUTILS_EXT=1
-DISTUTILS_USE_PEP517=setuptools
-inherit desktop distutils-r1 qmake-utils virtualx xdg
-
-DESCRIPTION="Qt scientific plotting package with good Postscript output"
-HOMEPAGE="https://veusz.github.io/"
-SRC_URI="https://github.com/${PN}/${PN}/releases/download/${P}/${P}.tar.gz"
-
-LICENSE="GPL-2"
-SLOT="0"
-KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux"
-IUSE="dbus hdf5"
-
-COMMON_DEPEND="
-	dev-python/numpy[${PYTHON_USEDEP}]
-	dev-python/pyqt5[gui,printsupport,svg,widgets,${PYTHON_USEDEP}]
-"
-RDEPEND="${COMMON_DEPEND}
-	dbus? ( dev-python/dbus-python[${PYTHON_USEDEP}] )
-	hdf5? ( dev-python/h5py[${PYTHON_USEDEP}] )
-"
-BDEPEND="${COMMON_DEPEND}
-	dev-python/sip:5[${PYTHON_USEDEP}]
-"
-
-PATCHES=( "${FILESDIR}"/tomli.patch )
-
-distutils_enable_sphinx Documents/manual-source \
-	dev-python/alabaster
-
-src_prepare() {
-	distutils-r1_src_prepare
-	xdg_environment_reset
-}
-
-python_compile() {
-	distutils-r1_python_compile build_ext --qmake-exe=$(qt5_get_bindir)/qmake
-}
-
-python_test() {
-	VIRTUALX_COMMAND="${EPYTHON}" \
-		VEUSZ_RESOURCE_DIR="${S}" \
-		virtx tests/runselftest.py
-}
-
-python_install() {
-	distutils-r1_python_install
-	# symlink the license, bug #341653
-	rm "${D}/$(python_get_sitedir)"/${PN}/{COPYING,AUTHORS,ChangeLog} || die
-	mkdir -p "${D}/$(python_get_sitedir)" || die
-	cat >> "${D}/$(python_get_sitedir)"/${PN}/COPYING <<- EOF
-	Please visit
-
-	https://www.gnu.org/licenses/gpl-2.0.html
-
-	for the full license text.
-	EOF
-}
-
-python_install_all() {
-	distutils-r1_python_install_all
-
-	doicon icons/veusz.png
-	domenu "${FILESDIR}"/veusz.desktop
-	insinto /usr/share/mime/packages
-	doins "${FILESDIR}"/veusz.xml
-}