Adding metadata

9 files changed, 739 insertions, 0 deletions

diff --git a/sci-physics/yoda/Manifest b/sci-physics/yoda/Manifest
new file mode 100644
index 000000000000..04739894f225
--- /dev/null
+++ b/sci-physics/yoda/Manifest
@@ -0,0 +1,3 @@
+DIST YODA-1.9.10.tar.bz2 1278729 BLAKE2B f6ae9b579d79b6be62e9644e327f0b449882c0f1a0efaac09ac97eae90a2ced10bf2b13447d75390552b3e4d8c128e7a33184bf8b2d308236f828e611df6d7a4 SHA512 54a455a1b2772ea3201477d4dddcf0c92c85bfee8825d8726d62331ebacb37fc8d1f6e02cdfe592722f2a747a46786d2bdb3c36cc982794a30b25e718d32e998
+DIST YODA-2.1.2.tar.bz2 1022526 BLAKE2B 75f13b04b66b632c66e2442f8bf8ccdb23ce15eec88e9b26a7924d0dc0e4ca80be0eadaf032aeec489a48b2b21beb9656d4f8fdf03ece02dca81133e23850d8d SHA512 39c21f97333c98744006d39903c3cdfd617a8ab6fc253f08412898e8998678963912bd6c6fb0b7bb58e162f48658606d9cdb891f12bc64ff730b158292ff9a85
+DIST YODA-2.1.3.tar.bz2 1033195 BLAKE2B 14065f1bc9a149206e07b80551740b59d8701106cb787ef5c1e1846590d819fd544fe5949859018f3c36daecebdb255308904091eb33b82eb6796a0b43c770f2 SHA512 8424746078434f0fedc405f35d89638bdf01a1f1e49dfed8a8da98682f3d9561356d9eea7cdc22898a861bc980c000e75cc4e63ed9e15670e53b2f15760cf813
diff --git a/sci-physics/yoda/files/yoda-1.9.9-configure.patch b/sci-physics/yoda/files/yoda-1.9.9-configure.patch
new file mode 100644
index 000000000000..47872f64097a
--- /dev/null
+++ b/sci-physics/yoda/files/yoda-1.9.9-configure.patch
@@ -0,0 +1,56 @@
+From a9267acfaadf93cd4fbe6d5a91e766bfb3bf154a Mon Sep 17 00:00:00 2001
+From: Alexander Puck Neuwirth <alexander@neuwirth-informatik.de>
+Date: Fri, 15 Mar 2024 20:36:32 +0000
+Subject: [PATCH 1/2] Fix configure failure for uncommon shells
+
+---
+ configure.ac | 4 ++--
+ 1 file changed, 2 insertions(+), 2 deletions(-)
+
+diff --git a/configure.ac b/configure.ac
+index 86de6b35..e9db8ee7 100644
+--- a/configure.ac
++++ b/configure.ac
+@@ -131,11 +131,11 @@ if test x$enable_pyext = xyes; then
+     enable_pyext=no
+   fi
+ fi
+-AM_CONDITIONAL(ENABLE_PYEXT, [test x$enable_pyext == xyes])
++AM_CONDITIONAL(ENABLE_PYEXT, [test x$enable_pyext = xyes])
+ 
+ 
+ ## Cython checks
+-if test x$enable_pyext == xyes; then
++if test x$enable_pyext = xyes; then
+   AM_CHECK_CYTHON([0.24], [:], [:])
+   if test x$CYTHON_FOUND = xyes; then
+     AC_PATH_PROGS(CYTHON, [$CYTHON cython-$PYTHON_VERSION cython$PYTHON_VERSION cython-$PYTHON_MAJOR_VERSION cython$PYTHON_MAJOR_VERSION cython])
+-- 
+GitLab
+
+
+From 62f321a54d83a3937d5061759ca04b97aa8e2616 Mon Sep 17 00:00:00 2001
+From: Alexander Puck Neuwirth <alexander@neuwirth-informatik.de>
+Date: Fri, 15 Mar 2024 20:41:19 +0000
+Subject: [PATCH 2/2] Update configure.ac
+
+---
+ configure.ac | 2 +-
+ 1 file changed, 1 insertion(+), 1 deletion(-)
+
+diff --git a/configure.ac b/configure.ac
+index e9db8ee7..6a8a34cb 100644
+--- a/configure.ac
++++ b/configure.ac
+@@ -194,7 +194,7 @@ AC_CONFIG_FILES([yodaenv.sh yoda.pc])
+ 
+ AC_OUTPUT
+ 
+-if test x$enable_pyext == xyes; then
++if test x$enable_pyext = xyes; then
+    cat <<EOF
+ 
+ ************************************************************
+-- 
+GitLab
+
diff --git a/sci-physics/yoda/files/yoda-2.1.2-testbinestimate.patch b/sci-physics/yoda/files/yoda-2.1.2-testbinestimate.patch
new file mode 100644
index 000000000000..9e6f1cbb103b
--- /dev/null
+++ b/sci-physics/yoda/files/yoda-2.1.2-testbinestimate.patch
@@ -0,0 +1,30 @@
+https://gitlab.com/hepcedar/yoda/-/merge_requests/387
+From 12c3786635875ebf3e7c969248654191736b660a Mon Sep 17 00:00:00 2001
+From: Alexander Puck Neuwirth <alexander@neuwirth-informatik.de>
+Date: Sat, 20 Dec 2025 19:46:34 +0100
+Subject: [PATCH] fix rounding uncertainty on bin edge in tests
+
+Closes: https://gitlab.com/hepcedar/yoda/-/issues/151
+---
+ tests/TestBinEstimators.cc | 5 ++++-
+ 1 file changed, 4 insertions(+), 1 deletion(-)
+
+diff --git a/tests/TestBinEstimators.cc b/tests/TestBinEstimators.cc
+index 14fb9f5e..e89cccf3 100644
+--- a/tests/TestBinEstimators.cc
++++ b/tests/TestBinEstimators.cc
+@@ -40,7 +40,10 @@ auto testLogEst() {
+                         est2.estindex(  0.) == 0 &&
+                         est2.estindex(  1.) == 1 &&
+                         est2.estindex(  5.) == 1 &&
+-                        est2.estindex( 10.) == 2 &&
++                        est2.estindex( 9.9) == 1 &&
++                        // amd64 vs x86 rounding can give different results here
++                        (est2.estindex(10.) == 1 || est2.estindex( 10.) == 2) &&
++                        est2.estindex(10.1) == 2 &&
+                         est2.estindex(100.) == 2);
+ }
+ 
+-- 
+GitLab
+
diff --git a/sci-physics/yoda/files/yoda-2.1.3-stdvector.patch b/sci-physics/yoda/files/yoda-2.1.3-stdvector.patch
new file mode 100644
index 000000000000..5dd1bc78aae8
--- /dev/null
+++ b/sci-physics/yoda/files/yoda-2.1.3-stdvector.patch
@@ -0,0 +1,173 @@
+From 22c3cfbd04bdd7ef31db0800f9fa8d5a7f637e2e Mon Sep 17 00:00:00 2001
+From: Alexander Puck Neuwirth <alexander@neuwirth-informatik.de>
+Date: Mon, 25 May 2026 12:55:59 +0200
+Subject: [PATCH 1/2] Use namespace std and remove std:: prefixes
+
+---
+ tests/TestBinnedStorage.cc | 35 ++++++++++++++++++-----------------
+ 1 file changed, 18 insertions(+), 17 deletions(-)
+
+diff --git a/tests/TestBinnedStorage.cc b/tests/TestBinnedStorage.cc
+index 4ce8a18c..b61a078a 100644
+--- a/tests/TestBinnedStorage.cc
++++ b/tests/TestBinnedStorage.cc
+@@ -9,18 +9,19 @@
+ #include <vector>
+ 
+ using namespace YODA;
++using namespace std;
+ 
+-using DStrAxis = Axis<std::string>;
++using DStrAxis = Axis<string>;
+ using CDblAxis = Axis<double>;
+ using DIntAxis = Axis<int>;
+ 
+ using BinningT = Binning<DStrAxis, CDblAxis, DIntAxis>;
+ 
+ template <typename T>
+-using StorageT = BinnedStorage<T, std::string, double, int>;
++using StorageT = BinnedStorage<T, string, double, int>;
+ 
+ template <size_t N, typename T>
+-using FillableT = FillableStorage<N, T, std::string, double, int>;
++using FillableT = FillableStorage<N, T, string, double, int>;
+ 
+ auto constructors() {
+   BinningT binning({"test1", "test2"}, {1., 2., 3., 4.}, {1, 2, 3, 4, 5});
+@@ -63,7 +64,7 @@ auto adapterConstructors() {
+   auto binStorage2 = FillableT<3, double>(binning, adapter1);
+   auto binStorage3 = FillableT<3, TestClass>(binning, adapter2);
+ 
+-  binStorage3.fill({"test1", 1.5, 1}, std::make_index_sequence<3>());
++  binStorage3.fill({"test1", 1.5, 1}, make_index_sequence<3>());
+ 
+   FillableT<3, TestClass>::BinType& bin = binStorage3.binAt({"test1", 1.5, 1});
+ 
+@@ -83,10 +84,10 @@ auto set() {
+ }
+ 
+ auto binsVectorWrapper() {
+-  auto binning = std::make_shared<BinningT>(
++  auto binning = make_shared<BinningT>(
+     BinningT({"test1", "test2"}, {1., 2., 3., 4.}, {1, 2, 3, 4, 5}));
+   using BinT = Bin<3, int, BinningT>;
+-  std::vector<BinT> bins;
++  vector<BinT> bins;
+ 
+   bins.reserve(100);
+   for(size_t i = 0; i < 100; i++){
+@@ -94,9 +95,9 @@ auto binsVectorWrapper() {
+   }
+ 
+   /// @note Must be sorted.
+-  std::vector<size_t> hiddenBins = {0, 9, 15, 87};
++  vector<size_t> hiddenBins = {0, 9, 15, 87};
+ 
+-  auto vecWrapper = BinsVecWrapper<std::vector<BinT>>(bins, hiddenBins);
++  auto vecWrapper = BinsVecWrapper<vector<BinT>>(bins, hiddenBins);
+ 
+   for (auto& bin : vecWrapper) {
+     for (auto& i : hiddenBins) {
+@@ -178,8 +179,8 @@ auto dbnAdapter() {
+ 
+   auto binStorage = FillableT<3, Dbn<3>>(binning);
+ 
+-  binStorage.fill({"test1", 1.4, 1}, std::make_index_sequence<3>(), 2.0, 1.0);
+-  binStorage.fill({"test1", 1.6, 1}, std::make_index_sequence<3>(), 2.0, 1.0);
++  binStorage.fill({"test1", 1.4, 1}, make_index_sequence<3>(), 2.0, 1.0);
++  binStorage.fill({"test1", 1.6, 1}, make_index_sequence<3>(), 2.0, 1.0);
+ 
+   auto& bin = binStorage.binAt({"test1", 1.4, 1});
+ 
+@@ -190,7 +191,7 @@ auto shape() {
+   vector<string> sedges{"A", "B", "C"};
+   vector<double> dedges{1.,2.,3.,4.};
+   vector<int> iedges{1,2,3,4,5,6,7};
+-  using BinStorageT = BinnedStorage<double, std::string, double, int>;
++  using BinStorageT = BinnedStorage<double, string, double, int>;
+   BinStorageT storage(sedges, dedges, iedges);
+   const bool res1 = storage.shape() == vector<size_t>{3, 3, 7};
+   const bool res2 = storage.shape(true) == vector<size_t>{4, 5, 8};
+@@ -198,10 +199,10 @@ auto shape() {
+ }
+ 
+ auto getBins() {
+-  using BinStorageT = BinnedStorage<double, std::string, double>;
++  using BinStorageT = BinnedStorage<double, string, double>;
+   BinStorageT binnedStorage1({"test1", "test2"}, { 1.0, 2.0, 3.0});
+ 
+-  std::vector<size_t> overflowIndices = {0, 1, 2, 3, 6, 9, 10, 11};
++  vector<size_t> overflowIndices = {0, 1, 2, 3, 6, 9, 10, 11};
+ 
+   auto binsVec1 = binnedStorage1.bins();
+ 
+@@ -213,11 +214,11 @@ auto getBins() {
+ 
+   /// @note Double curly braces to construct temporary axes, because
+   /// there is no constructor defined to work with arguments
+-  /// of std::initializer_list<T> and std::initializer_list<std::initializer_list<T>>
++  /// of initializer_list<T> and initializer_list<initializer_list<T>>
+   /// type. Intermediate axis is created.
+   /*BinStorageT binnedStorage2({{"test1", "test2"}}, {{{1., 2.}, {3., 4.}}});
+ 
+-  std::vector<size_t> hiddenBinIndices = {4, 5}; /// {0,1} + 2*2
++  vector<size_t> hiddenBinIndices = {4, 5}; /// {0,1} + 2*2
+ 
+   auto binsVec2 = binnedStorage2.bins(true);
+ 
+@@ -231,7 +232,7 @@ auto getBins() {
+ }
+ 
+ auto mergeBins() {
+-  using BinStorageT = BinnedStorage<double, std::string, double>;
++  using BinStorageT = BinnedStorage<double, string, double>;
+   BinStorageT binnedStorage1({"test1", "test2"}, {1., 2., 3.});
+   BinStorageT binnedStorage2({"test1", "test2"}, {1., 2., 3., 4., 5., 6.});
+ 
+@@ -248,7 +249,7 @@ auto mergeBins() {
+ }
+ 
+ auto binnedStorageOperators() {
+-  using BinStorageT = BinnedStorage<double, std::string, double>;
++  using BinStorageT = BinnedStorage<double, string, double>;
+   BinStorageT binnedStorage1({"test1", "test2"}, {1., 2., 3.});
+   BinStorageT binnedStorage2({"test1", "test2"}, {1., 2., 3., 4., 5., 6.});
+ 
+-- 
+GitLab
+
+
+From a34335f7058152218ba35a5c2af13780c1c6524f Mon Sep 17 00:00:00 2001
+From: Alexander Puck Neuwirth <alexander@neuwirth-informatik.de>
+Date: Mon, 25 May 2026 14:01:46 +0200
+Subject: [PATCH 2/2] rename: set -> setFunction
+
+---
+ tests/TestBinnedStorage.cc | 4 ++--
+ 1 file changed, 2 insertions(+), 2 deletions(-)
+
+diff --git a/tests/TestBinnedStorage.cc b/tests/TestBinnedStorage.cc
+index b61a078a..9382f40f 100644
+--- a/tests/TestBinnedStorage.cc
++++ b/tests/TestBinnedStorage.cc
+@@ -71,7 +71,7 @@ auto adapterConstructors() {
+   return CHECK_TEST_RES(bin.counter == 1);
+ }
+ 
+-auto set() {
++auto setFunction() {
+   BinningT binning({"test1", "test2"}, {1., 2., 3., 4.}, {1, 2, 3, 4, 5});
+ 
+   auto binStorage = FillableT<3, TestClass>(binning, [](...){});
+@@ -285,7 +285,7 @@ auto testBinnedStorage() {
+   return CHECK_TEST_RES(
+     (constructors()            == EXIT_SUCCESS) &&
+     (adapterConstructors()     == EXIT_SUCCESS) &&
+-    (set()                     == EXIT_SUCCESS) &&
++    (setFunction()                     == EXIT_SUCCESS) &&
+     (binsVectorWrapper()       == EXIT_SUCCESS) &&
+     (binSpaceCharacteristics() == EXIT_SUCCESS) &&
+     (arithmeticWrapper()       == EXIT_SUCCESS) &&
+-- 
+GitLab
+
diff --git a/sci-physics/yoda/metadata.xml b/sci-physics/yoda/metadata.xml
new file mode 100644
index 000000000000..a50ed4254d55
--- /dev/null
+++ b/sci-physics/yoda/metadata.xml
@@ -0,0 +1,28 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<!DOCTYPE pkgmetadata SYSTEM "https://docs.baldeagleos.com/dtd/metadata.dtd">
+<pkgmetadata>
+  <maintainer type="person">
+    <email>apn-pucky@gentoo.org</email>
+    <name>Alexander Puck Neuwirth</name>
+  </maintainer>
+  <maintainer type="project">
+    <email>sci-physics@gentoo.org</email>
+    <name>Gentoo Physics Project</name>
+  </maintainer>
+  <longdescription>
+    Yet more Objects for Data Analysis is a small set of data analysis
+    (specifically histogramming) classes being developed by MCnet
+    members as a lightweight common system for MC event generator
+    validation analyses, particularly as the core histogramming system
+    in Rivet.
+  </longdescription>
+  <use>
+    <flag name="root">Adds support for <pkg>sci-physics/root</pkg>
+    </flag>
+    <flag name="highfive">Build with <pkg>sci-libs/highfive</pkg> and <pkg>sci-libs/hdf5</pkg>
+    </flag>
+    <flag name="eigen">Build with <pkg>dev-cpp/eigen</pkg>
+    </flag>
+  </use>
+  <origin>baldeagleos-repo</origin>
+</pkgmetadata>
diff --git a/sci-physics/yoda/yoda-1.9.10.ebuild b/sci-physics/yoda/yoda-1.9.10.ebuild
new file mode 100644
index 000000000000..90a4b247f7d4
--- /dev/null
+++ b/sci-physics/yoda/yoda-1.9.10.ebuild
@@ -0,0 +1,112 @@
+# Copyright 2022-2026 Gentoo Authors
+# Distributed under the terms of the GNU General Public License v2
+
+EAPI=8
+
+PYTHON_COMPAT=( python3_{13..14} )
+
+inherit bash-completion-r1 autotools python-single-r1 optfeature
+
+DESCRIPTION="Yet more Objects for (High Energy Physics) Data Analysis"
+HOMEPAGE="https://yoda.hepforge.org/"
+
+if [[ ${PV} == 9999 ]]; then
+	inherit git-r3
+	EGIT_REPO_URI="https://gitlab.com/hepcedar/yoda"
+else
+	SRC_URI="https://yoda.hepforge.org/downloads?f=${P^^}.tar.bz2 -> ${P^^}.tar.bz2"
+	S="${WORKDIR}/${P^^}"
+	KEYWORDS="~amd64"
+fi
+
+LICENSE="GPL-3"
+SLOT="0/${PV}"
+IUSE="root test +python +zlib"
+RESTRICT="!test? ( test )"
+REQUIRED_USE="python? ( ${PYTHON_REQUIRED_USE} ) root? ( python )"
+
+RDEPEND="
+	root? ( sci-physics/root:=[${PYTHON_SINGLE_USEDEP}] )
+	python? ( ${PYTHON_DEPS} )
+	zlib? ( virtual/zlib:= )
+"
+DEPEND="${RDEPEND}"
+BDEPEND="
+	python? (
+		$(python_gen_cond_dep '
+			>=dev-python/cython-0.29.24[${PYTHON_USEDEP}]
+		')
+		test? (
+			$(python_gen_cond_dep '
+				dev-python/numpy[${PYTHON_USEDEP}]
+				dev-python/matplotlib[${PYTHON_USEDEP}]
+			')
+		)
+	)
+"
+
+PATCHES=(
+	"${FILESDIR}"/${PN}-1.9.9-configure.patch
+)
+
+pkg_setup() {
+	use python && python-single-r1_pkg_setup
+}
+
+src_prepare() {
+	default
+	# reconf due to python3_10 patch
+	eautoreconf
+}
+
+src_configure() {
+	# we need to use the prefix cython here
+	econf --disable-static \
+		$(use_enable root) \
+		$(use_enable python pyext) \
+		$(use_with zlib zlib "${ESYSROOT}/usr") \
+		$(usex python CYTHON="${ESYSROOT}/usr/bin/cython")
+}
+
+src_test() {
+	# PYTESTS and SHTESTS both require python tools
+	if use python; then
+		emake check
+	else
+		emake check PYTESTS= SHTESTS= NO_PYTHON=1
+	fi
+}
+
+src_install() {
+	emake install DESTDIR="${ED}"
+
+	if use python ; then
+		newbashcomp "${ED}"/etc/bash_completion.d/${PN}-completion ${PN}
+		bashcomp_alias ${PN} ${PN}-config
+		bashcomp_alias ${PN} ${PN}stack \
+			aida2flat \
+			${PN}diff \
+			${PN}cnv \
+			${PN}hist \
+			${PN}-config \
+			${PN}2flat \
+			${PN}scale \
+			${PN}2root \
+			${PN}cmp \
+			${PN}merge \
+			${PN}plot \
+			aida2${PN} \
+			${PN}ls \
+			${PN}envelope \
+			${PN}2aida
+	fi
+
+	rm "${ED}"/etc/bash_completion.d/${PN}-completion || die
+
+	use python && python_optimize
+	find "${ED}" -name '*.la' -delete || die
+}
+
+pkg_postinst() {
+	optfeature "plotting support" virtual/latex-base dev-python/matplotlib
+}
diff --git a/sci-physics/yoda/yoda-2.1.2.ebuild b/sci-physics/yoda/yoda-2.1.2.ebuild
new file mode 100644
index 000000000000..78267727f58d
--- /dev/null
+++ b/sci-physics/yoda/yoda-2.1.2.ebuild
@@ -0,0 +1,113 @@
+# Copyright 2022-2026 Gentoo Authors
+# Distributed under the terms of the GNU General Public License v2
+
+EAPI=8
+
+PYTHON_COMPAT=( python3_{13..14} )
+
+inherit bash-completion-r1 python-single-r1 optfeature autotools
+
+DESCRIPTION="Yet more Objects for (High Energy Physics) Data Analysis"
+HOMEPAGE="https://yoda.hepforge.org/"
+
+if [[ ${PV} == 9999 ]]; then
+	inherit git-r3
+	EGIT_REPO_URI="https://gitlab.com/hepcedar/yoda"
+	EGIT_BRANCH="main"
+else
+	SRC_URI="https://yoda.hepforge.org/downloads?f=${P^^}.tar.bz2 -> ${P^^}.tar.bz2"
+	S="${WORKDIR}/${P^^}"
+	KEYWORDS="~amd64 ~x86"
+fi
+
+LICENSE="GPL-3"
+SLOT="0/${PV}"
+IUSE="test +highfive +python +zlib"
+RESTRICT="!test? ( test )"
+REQUIRED_USE="python? ( ${PYTHON_REQUIRED_USE} )"
+
+RDEPEND="
+	dev-cpp/yaml-cpp
+	highfive? (
+		sci-libs/highfive
+		sci-libs/hdf5[cxx]
+	)
+	python? ( ${PYTHON_DEPS} )
+	zlib? ( virtual/zlib:= )
+"
+DEPEND="${RDEPEND}"
+BDEPEND="
+	python? (
+		$(python_gen_cond_dep '
+			>=dev-python/cython-0.29.24[${PYTHON_USEDEP}]
+		')
+		test? (
+			$(python_gen_cond_dep '
+				dev-python/numpy[${PYTHON_USEDEP}]
+				dev-python/matplotlib[${PYTHON_USEDEP}]
+			')
+		)
+	)
+"
+
+PATCHES=(
+	"${FILESDIR}"/${P}-testbinestimate.patch
+)
+
+pkg_setup() {
+	use python && python-single-r1_pkg_setup
+}
+
+src_prepare() {
+	default
+	# reconf due to 9999 version
+	eautoreconf
+}
+
+src_configure() {
+	# we need to use the prefix cython here
+	econf --disable-static \
+		--with-yaml-cpp="${EPREFIX}/usr" \
+		$(use_enable highfive h5) \
+		$(use_with highfive highfive "${ESYSROOT}/usr") \
+		$(use_enable python pyext) \
+		$(use_with zlib zlib "${ESYSROOT}/usr") \
+		$(usex python CYTHON="${ESYSROOT}/usr/bin/cython")
+}
+
+src_test() {
+	# PYTESTS and SHTESTS both require python tools
+	if use python; then
+		emake check
+	else
+		emake check PYTESTS= SHTESTS= NO_PYTHON=1
+	fi
+}
+
+src_install() {
+	default
+
+	if use python ; then
+		newbashcomp "${ED}"/etc/bash_completion.d/${PN}-completion ${PN}-config
+		bashcomp_alias ${PN}-config \
+			${PN}ls \
+			${PN}diff \
+			${PN}merge \
+			${PN}stack \
+			${PN}scale \
+			${PN}plot \
+			${PN}envelope \
+			${PN}cnv \
+			${PN}2root
+		rm "${ED}"/etc/bash_completion.d/${PN}-completion || die
+		python_optimize
+	fi
+
+	find "${ED}" -name '*.la' -delete || die
+}
+
+pkg_postinst() {
+	optfeature "root conversion" sci-physics/root
+	optfeature "latex plotting support" virtual/latex-base
+	optfeature "python plotting support" dev-python/matplotlib
+}
diff --git a/sci-physics/yoda/yoda-2.1.3.ebuild b/sci-physics/yoda/yoda-2.1.3.ebuild
new file mode 100644
index 000000000000..9cabaf05bd01
--- /dev/null
+++ b/sci-physics/yoda/yoda-2.1.3.ebuild
@@ -0,0 +1,113 @@
+# Copyright 2022-2026 Gentoo Authors
+# Distributed under the terms of the GNU General Public License v2
+
+EAPI=8
+
+PYTHON_COMPAT=( python3_{13..14} )
+
+inherit bash-completion-r1 python-single-r1 optfeature autotools
+
+DESCRIPTION="Yet more Objects for (High Energy Physics) Data Analysis"
+HOMEPAGE="https://yoda.hepforge.org/"
+
+if [[ ${PV} == 9999 ]]; then
+	inherit git-r3
+	EGIT_REPO_URI="https://gitlab.com/hepcedar/yoda"
+	EGIT_BRANCH="main"
+else
+	SRC_URI="https://yoda.hepforge.org/downloads?f=${P^^}.tar.bz2 -> ${P^^}.tar.bz2"
+	S="${WORKDIR}/${P^^}"
+	KEYWORDS="~amd64 ~x86"
+fi
+
+LICENSE="GPL-3"
+SLOT="0/${PV}"
+IUSE="test +highfive +python +zlib"
+RESTRICT="!test? ( test )"
+REQUIRED_USE="python? ( ${PYTHON_REQUIRED_USE} )"
+
+RDEPEND="
+	dev-cpp/yaml-cpp
+	highfive? (
+		sci-libs/highfive
+		sci-libs/hdf5[cxx]
+	)
+	python? ( ${PYTHON_DEPS} )
+	zlib? ( virtual/zlib:= )
+"
+DEPEND="${RDEPEND}"
+BDEPEND="
+	python? (
+		$(python_gen_cond_dep '
+			>=dev-python/cython-0.29.24[${PYTHON_USEDEP}]
+		')
+		test? (
+			$(python_gen_cond_dep '
+				dev-python/numpy[${PYTHON_USEDEP}]
+				dev-python/matplotlib[${PYTHON_USEDEP}]
+			')
+		)
+	)
+"
+
+PATCHES=(
+	"${FILESDIR}"/${P}-stdvector.patch
+)
+
+pkg_setup() {
+	use python && python-single-r1_pkg_setup
+}
+
+src_prepare() {
+	default
+	# reconf due to 9999 version
+	eautoreconf
+}
+
+src_configure() {
+	# we need to use the prefix cython here
+	econf --disable-static \
+		--with-yaml-cpp="${EPREFIX}/usr" \
+		$(use_enable highfive h5) \
+		$(use_with highfive highfive "${ESYSROOT}/usr") \
+		$(use_enable python pyext) \
+		$(use_with zlib zlib "${ESYSROOT}/usr") \
+		$(usex python CYTHON="${ESYSROOT}/usr/bin/cython")
+}
+
+src_test() {
+	# PYTESTS and SHTESTS both require python tools
+	if use python; then
+		emake check
+	else
+		emake check PYTESTS= SHTESTS= NO_PYTHON=1
+	fi
+}
+
+src_install() {
+	default
+
+	if use python ; then
+		newbashcomp "${ED}"/etc/bash_completion.d/${PN}-completion ${PN}-config
+		bashcomp_alias ${PN}-config \
+			${PN}ls \
+			${PN}diff \
+			${PN}merge \
+			${PN}stack \
+			${PN}scale \
+			${PN}plot \
+			${PN}envelope \
+			${PN}cnv \
+			${PN}2root
+		rm "${ED}"/etc/bash_completion.d/${PN}-completion || die
+		python_optimize
+	fi
+
+	find "${ED}" -name '*.la' -delete || die
+}
+
+pkg_postinst() {
+	optfeature "root conversion" sci-physics/root
+	optfeature "latex plotting support" virtual/latex-base
+	optfeature "python plotting support" dev-python/matplotlib
+}
diff --git a/sci-physics/yoda/yoda-9999.ebuild b/sci-physics/yoda/yoda-9999.ebuild
new file mode 100644
index 000000000000..25ca71b9e31a
--- /dev/null
+++ b/sci-physics/yoda/yoda-9999.ebuild
@@ -0,0 +1,111 @@
+# Copyright 2022-2026 Gentoo Authors
+# Distributed under the terms of the GNU General Public License v2
+
+EAPI=8
+
+PYTHON_COMPAT=( python3_{13..14} )
+
+inherit bash-completion-r1 python-single-r1 optfeature autotools
+
+DESCRIPTION="Yet more Objects for (High Energy Physics) Data Analysis"
+HOMEPAGE="https://yoda.hepforge.org/"
+
+if [[ ${PV} == 9999 ]]; then
+	inherit git-r3
+	EGIT_REPO_URI="https://gitlab.com/hepcedar/yoda"
+	EGIT_BRANCH="main"
+else
+	SRC_URI="https://yoda.hepforge.org/downloads?f=${P^^}.tar.bz2 -> ${P^^}.tar.bz2"
+	S="${WORKDIR}/${P^^}"
+	KEYWORDS="~amd64 ~x86"
+fi
+
+LICENSE="GPL-3"
+SLOT="0/${PV}"
+IUSE="test +eigen +highfive +python +zlib"
+RESTRICT="!test? ( test )"
+REQUIRED_USE="python? ( ${PYTHON_REQUIRED_USE} )"
+
+RDEPEND="
+	dev-cpp/yaml-cpp
+	eigen? ( dev-cpp/eigen:3= )
+	highfive? (
+		sci-libs/highfive
+		sci-libs/hdf5[cxx]
+	)
+	python? ( ${PYTHON_DEPS} )
+	zlib? ( virtual/zlib:= )
+"
+DEPEND="${RDEPEND}"
+BDEPEND="
+	python? (
+		$(python_gen_cond_dep '
+			>=dev-python/cython-0.29.24[${PYTHON_USEDEP}]
+		')
+		test? (
+			$(python_gen_cond_dep '
+				dev-python/numpy[${PYTHON_USEDEP}]
+				dev-python/matplotlib[${PYTHON_USEDEP}]
+			')
+		)
+	)
+"
+
+pkg_setup() {
+	use python && python-single-r1_pkg_setup
+}
+
+src_prepare() {
+	default
+	# reconf due to 9999 version
+	eautoreconf
+}
+
+src_configure() {
+	# we need to use the prefix cython here
+	econf --disable-static \
+		--with-yaml-cpp="${EPREFIX}/usr" \
+		$(use_with eigen eigen "${EPREFIX}/usr/include/eigen3") \
+		$(use_enable highfive h5) \
+		$(use_with highfive highfive "${ESYSROOT}/usr") \
+		$(use_enable python pyext) \
+		$(use_with zlib zlib "${ESYSROOT}/usr") \
+		$(usex python CYTHON="${ESYSROOT}/usr/bin/cython")
+}
+
+src_test() {
+	# PYTESTS and SHTESTS both require python tools
+	if use python; then
+		emake check
+	else
+		emake check PYTESTS= SHTESTS= NO_PYTHON=1
+	fi
+}
+
+src_install() {
+	default
+
+	if use python ; then
+		newbashcomp "${ED}"/etc/bash_completion.d/${PN}-completion ${PN}-config
+		bashcomp_alias ${PN}-config \
+			${PN}ls \
+			${PN}diff \
+			${PN}merge \
+			${PN}stack \
+			${PN}scale \
+			${PN}plot \
+			${PN}envelope \
+			${PN}cnv \
+			${PN}2root
+		rm "${ED}"/etc/bash_completion.d/${PN}-completion || die
+		python_optimize
+	fi
+
+	find "${ED}" -name '*.la' -delete || die
+}
+
+pkg_postinst() {
+	optfeature "root conversion" sci-physics/root
+	optfeature "latex plotting support" virtual/latex-base
+	optfeature "python plotting support" dev-python/matplotlib
+}