Adding metadata

4 files changed, 0 insertions, 125 deletions

diff --git a/sci-biology/emboss/Manifest b/sci-biology/emboss/Manifest
deleted file mode 100644
index ccdb0846835b..000000000000
--- a/sci-biology/emboss/Manifest
+++ /dev/null
@@ -1,2 +0,0 @@
-DIST EMBOSS-6.6.0.tar.gz 117962028 BLAKE2B 91bf3c680290bd975d2ddb5251089d7f75f8a44a26e1247e93d2c9cf2f23e6b89c4218022ba1af0c940136ff56782f40d2c4604dc756b400ae23f223da7f3cca SHA512 2d28a03381f7dc98d205aa50202fbbac02ad218fc775d86579d310296be124403623484b1907154d915f15cd32a9f8cf16ecfaa6c4a28b362e24dc8e6380b75a
-DIST emboss-6.6.0-patches-r2.tar.xz 10616 BLAKE2B 123251c54cccdbec84232a9b14f1907f27ed8885c25166265d679aed4f530717692ed3217a53b67582d7f9ac296b922e19be6096ab23d8bd0ff9470f56fe06eb SHA512 6db0c33f1f114dda2cea97200b7cd05d2173c68b5f939d681220d7ca7e253dc08b83070393b8844d1fb0292fe9cb8b23463459badcacd6421220e775d533b589
diff --git a/sci-biology/emboss/emboss-6.6.0-r4.ebuild b/sci-biology/emboss/emboss-6.6.0-r4.ebuild
deleted file mode 100644
index f06a93896d10..000000000000
--- a/sci-biology/emboss/emboss-6.6.0-r4.ebuild
+++ /dev/null
@@ -1,67 +0,0 @@
-# Copyright 1999-2026 Gentoo Authors
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=8
-
-inherit autotools emboss-r3 readme.gentoo-r1
-
-DESCRIPTION="The European Molecular Biology Open Software Suite - A sequence analysis package"
-SRC_URI="
-	ftp://emboss.open-bio.org/pub/${PN^^}/${P^^}.tar.gz
-	https://dev.gentoo.org/~soap/distfiles/${P}-patches-r2.tar.xz"
-S="${WORKDIR}/${P^^}"
-
-LICENSE+=" Apache-2.0 GPL-3+ CC-BY-3.0"
-KEYWORDS="~amd64 ~x86"
-IUSE="minimal"
-
-RDEPEND="
-	!dev-build/cons
-	!games-action/xbomber
-"
-PDEPEND="
-	!minimal? (
-		sci-biology/aaindex
-		sci-biology/cutg
-		sci-biology/primer3
-		sci-biology/prints
-		sci-biology/prosite
-		sci-biology/rebase
-	)"
-
-PATCHES=( "${WORKDIR}"/patches/ )
-
-src_prepare() {
-	default
-	eautoreconf
-}
-
-src_install() {
-	emboss-r3_src_install
-
-	readme.gentoo_create_doc
-
-	# Install env file for setting libplplot and acd files path.
-	newenvd - 22emboss <<- EOF
-		# ACD files location
-		EMBOSS_ACDROOT="${EPREFIX}/usr/share/EMBOSS/acd"
-		EMBOSS_DATA="${EPREFIX}/usr/share/EMBOSS/data"
-	EOF
-
-	# Remove useless dummy files
-	find "${ED}"/usr/share/EMBOSS -name dummyfile -delete \
-		|| die "Failed to remove dummy files"
-
-	# Move the provided codon files to a different directory. This will avoid
-	# user confusion and file collisions on case-insensitive file systems (see
-	# bug #115446). This change is documented in "README.gentoo".
-	mv "${ED}"/usr/share/EMBOSS/data/CODONS{,.orig} \
-		|| die "Failed to move CODON directory"
-
-	# collision with dev-texlive/texlive-latexextra, bug #927976
-	mv "${ED}"/usr/bin/{,emboss-}wordcount || die
-}
-
-pkg_postinst() {
-	readme.gentoo_print_elog
-}
diff --git a/sci-biology/emboss/files/README.gentoo b/sci-biology/emboss/files/README.gentoo
deleted file mode 100644
index d1879bd0811c..000000000000
--- a/sci-biology/emboss/files/README.gentoo
+++ /dev/null
@@ -1,34 +0,0 @@
-Administrating EMBOSS on Gentoo systems
-=======================================
-
-
-Codon data files location
--------------------------
-
-The codon data files that are distributed with EMBOSS are installed in the
-``EPREFIX/usr/share/EMBOSS/data/CODONS.orig`` directory instead of the usual
-``EPREFIX/usr/share/EMBOSS/data/CODONS``. This is done to avoid confusion between
-these codon files and those installed with the CUTG database. The names of
-these files sometimes vary only by their case. Having both sets of files in
-the same directory is also impossible on systems such as MacOSX, where the
-root filesystem is case insensitive. If you do not have the CUTG database
-installed and want to use the codon files distributed with EMBOSS, you can
-symlink the ``CODONS.orig`` directory to ``CODONS``::
-
-	# cd ${EPREFIX}/usr/share/EMBOSS/data
-	# ln -s CODONS.orig CODONS
-
-
-Restriction enzymes equivalence file location
----------------------------------------------
-
-The restriction enzymes equivalence file distributed with EMBOSS is installed
-as ``EPREFIX/usr/share/EMBOSS/data/embossre.equ.orig`` rather than the usual
-``EPREFIX/usr/share/EMBOSS/data/embossre.equ``. This is done to avoid a file
-collision with the equivalence file provided by the Rebase database. If you do
-not have the Rebase database installed and want to use the equivalence file
-distributed with EMBOSS, you can symlink the ``embossre.equ.orig`` file to
-``embossre.equ``::
-
-	# cd ${EPREFIX}/usr/share/EMBOSS/data
-	# ln -s embossre.equ.orig embossre.equ
diff --git a/sci-biology/emboss/metadata.xml b/sci-biology/emboss/metadata.xml
deleted file mode 100644
index 1df105dd814b..000000000000
--- a/sci-biology/emboss/metadata.xml
+++ /dev/null
@@ -1,22 +0,0 @@
-<?xml version="1.0" encoding="UTF-8"?>
-<!DOCTYPE pkgmetadata SYSTEM "https://docs.baldeagleos.com/dtd/metadata.dtd">
-<pkgmetadata>
-  <maintainer type="project">
-    <email>sci-biology@gentoo.org</email>
-    <name>Gentoo Biology Project</name>
-  </maintainer>
-  <longdescription>
-		EMBOSS is "The European Molecular Biology Open Software Suite".
-		EMBOSS is a free Open Source software analysis package specially
-		developed for the needs of the molecular biology (e.g. EMBnet) user
-		community. The software automatically copes with data in a variety
-		of formats and even allows transparent retrieval of sequence data
-		from the web. Also, as extensive libraries are provided with the
-		package, it is a platform to allow other scientists to develop and
-		release software in true open source spirit. EMBOSS also integrates
-		a range of currently available packages and tools for sequence
-		analysis into a seamless whole. EMBOSS breaks the historical trend
-		towards commercial software packages.
-	</longdescription>
-  <origin>baldeagleos-repo</origin>
-</pkgmetadata>