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authorLiguros - Gitlab CI/CD [develop] <gitlab@liguros.net>2024-01-31 18:26:57 +0000
committerLiguros - Gitlab CI/CD [develop] <gitlab@liguros.net>2024-01-31 18:26:57 +0000
commita3af3e818c5a8edcffcf591e160100c6374ddb30 (patch)
tree95d091b181b10b8176bc3dca5b263f9edf522d41 /dev-python/xarray
parentcafb932c2ad8c7a099c667ec67353a54e0b98b55 (diff)
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Diffstat (limited to 'dev-python/xarray')
-rw-r--r--dev-python/xarray/files/xarray-2024.1.1-pytest-8.patch77
-rw-r--r--dev-python/xarray/xarray-2024.1.1.ebuild41
2 files changed, 100 insertions, 18 deletions
diff --git a/dev-python/xarray/files/xarray-2024.1.1-pytest-8.patch b/dev-python/xarray/files/xarray-2024.1.1-pytest-8.patch
new file mode 100644
index 000000000000..e85bb6de7b71
--- /dev/null
+++ b/dev-python/xarray/files/xarray-2024.1.1-pytest-8.patch
@@ -0,0 +1,77 @@
+From 306a50e344522a3f321d49d95488f457975fa553 Mon Sep 17 00:00:00 2001
+From: =?UTF-8?q?Micha=C5=82=20G=C3=B3rny?= <mgorny@gentoo.org>
+Date: Wed, 31 Jan 2024 11:31:26 +0100
+Subject: [PATCH 1/2] test_dataset: remove incorrect pytest.warns() to fix
+ pytest-8
+
+Remove two incorrect `pytest.warns()` assertions to fix test failures
+with pytest-8.0.0. Prior to this version, an exception raised would
+cause `pytest.warns()` to be ignored. This way fixed in 8.0.0, and now
+warnings must actually be emitted prior to the exception.
+
+In `test_drop_index_labels()`, the exception is raised at the very
+beginning of the function, prior to the deprecation warning.
+
+In `test_rename_multiindex()`, the warning is not emitted at all (it is
+not applicable to the call in question).
+---
+ xarray/tests/test_dataset.py | 6 ++----
+ 1 file changed, 2 insertions(+), 4 deletions(-)
+
+diff --git a/xarray/tests/test_dataset.py b/xarray/tests/test_dataset.py
+index fa9448f2f4..77d172f00b 100644
+--- a/xarray/tests/test_dataset.py
++++ b/xarray/tests/test_dataset.py
+@@ -2724,8 +2724,7 @@ def test_drop_index_labels(self) -> None:
+ assert_identical(data, actual)
+
+ with pytest.raises(ValueError):
+- with pytest.warns(DeprecationWarning):
+- data.drop(["c"], dim="x", errors="wrong_value") # type: ignore[arg-type]
++ data.drop(["c"], dim="x", errors="wrong_value") # type: ignore[arg-type]
+
+ with pytest.warns(DeprecationWarning):
+ actual = data.drop(["a", "b", "c"], "x", errors="ignore")
+@@ -3159,8 +3158,7 @@ def test_rename_multiindex(self) -> None:
+ original.rename({"a": "x"})
+
+ with pytest.raises(ValueError, match=r"'b' conflicts"):
+- with pytest.warns(UserWarning, match="does not create an index anymore"):
+- original.rename({"a": "b"})
++ original.rename({"a": "b"})
+
+ def test_rename_perserve_attrs_encoding(self) -> None:
+ # test propagate attrs/encoding to new variable(s) created from Index object
+
+From 3bc5abf4da35edda1f0c3e9e0d53e39331c1a76b Mon Sep 17 00:00:00 2001
+From: =?UTF-8?q?Micha=C5=82=20G=C3=B3rny?= <mgorny@gentoo.org>
+Date: Wed, 31 Jan 2024 11:35:04 +0100
+Subject: [PATCH 2/2] test_groupby: Clear recorded warnings for pytest-8
+ compatibility
+
+Clear the warnings recorded during the `pytest.warns()` use
+in `test_groupby_dims_property`, to fix test failures with pytest-8.0.0.
+Prior to this version, `pytest.warns()` invocation used to capture all
+warnings. Now it only captures the warnings that match the arguments,
+and the remaining warnings are re-emitted and therefore caught by
+`recwarn` fixture. To provide compatibility with both versions of
+pytest, clear the recorded warnings immediately after `pytest.warns()`.
+
+Fixes #8681
+---
+ xarray/tests/test_groupby.py | 2 ++
+ 1 file changed, 2 insertions(+)
+
+diff --git a/xarray/tests/test_groupby.py b/xarray/tests/test_groupby.py
+index 25fabd5e2b..b65c01fe76 100644
+--- a/xarray/tests/test_groupby.py
++++ b/xarray/tests/test_groupby.py
+@@ -67,6 +67,8 @@ def test_groupby_dims_property(dataset, recwarn) -> None:
+ with pytest.warns(UserWarning, match="The `squeeze` kwarg"):
+ assert dataset.groupby("x").dims == dataset.isel(x=1).dims
+ assert dataset.groupby("y").dims == dataset.isel(y=1).dims
++ # in pytest-8, pytest.warns() no longer clears all warnings
++ recwarn.clear()
+
+ # when squeeze=False, no warning should be raised
+ assert tuple(dataset.groupby("x", squeeze=False).dims) == tuple(
diff --git a/dev-python/xarray/xarray-2024.1.1.ebuild b/dev-python/xarray/xarray-2024.1.1.ebuild
index b02149f51f48..f35a95e2d7ea 100644
--- a/dev-python/xarray/xarray-2024.1.1.ebuild
+++ b/dev-python/xarray/xarray-2024.1.1.ebuild
@@ -40,27 +40,32 @@ BDEPEND="
EPYTEST_XDIST=1
distutils_enable_tests pytest
-EPYTEST_DESELECT=(
- # warning-targeted tests are fragile and not important to end users
- xarray/tests/test_backends.py::test_no_warning_from_dask_effective_get
- # TODO: segv in netcdf4-python
- 'xarray/tests/test_backends.py::test_open_mfdataset_manyfiles[netcdf4-20-True-5-5]'
- 'xarray/tests/test_backends.py::test_open_mfdataset_manyfiles[netcdf4-20-True-5-None]'
- 'xarray/tests/test_backends.py::test_open_mfdataset_manyfiles[netcdf4-20-True-None-5]'
- 'xarray/tests/test_backends.py::test_open_mfdataset_manyfiles[netcdf4-20-True-None-None]'
- xarray/tests/test_backends.py::TestDask::test_save_mfdataset_compute_false_roundtrip
- # TODO: broken
- xarray/tests/test_backends.py::TestNetCDF4Data
- xarray/tests/test_backends.py::TestNetCDF4ViaDaskData
- # hangs
- xarray/tests/test_backends.py::TestDask::test_dask_roundtrip
- # mismatches when pyarrow is installed
- # https://github.com/pydata/xarray/issues/8092
- xarray/tests/test_dask.py::TestToDaskDataFrame::test_to_dask_dataframe_2D
- xarray/tests/test_dask.py::TestToDaskDataFrame::test_to_dask_dataframe_not_daskarray
+PATCHES=(
+ # https://github.com/pydata/xarray/pull/8686
+ "${FILESDIR}/${P}-pytest-8.patch"
)
python_test() {
+ local EPYTEST_DESELECT=(
+ # warning-targeted tests are fragile and not important to end users
+ xarray/tests/test_backends.py::test_no_warning_from_dask_effective_get
+ # TODO: segv in netcdf4-python
+ 'xarray/tests/test_backends.py::test_open_mfdataset_manyfiles[netcdf4-20-True-5-5]'
+ 'xarray/tests/test_backends.py::test_open_mfdataset_manyfiles[netcdf4-20-True-5-None]'
+ 'xarray/tests/test_backends.py::test_open_mfdataset_manyfiles[netcdf4-20-True-None-5]'
+ 'xarray/tests/test_backends.py::test_open_mfdataset_manyfiles[netcdf4-20-True-None-None]'
+ xarray/tests/test_backends.py::TestDask::test_save_mfdataset_compute_false_roundtrip
+ # TODO: broken
+ xarray/tests/test_backends.py::TestNetCDF4Data
+ xarray/tests/test_backends.py::TestNetCDF4ViaDaskData
+ # hangs
+ xarray/tests/test_backends.py::TestDask::test_dask_roundtrip
+ # mismatches when pyarrow is installed
+ # https://github.com/pydata/xarray/issues/8092
+ xarray/tests/test_dask.py::TestToDaskDataFrame::test_to_dask_dataframe_2D
+ xarray/tests/test_dask.py::TestToDaskDataFrame::test_to_dask_dataframe_not_daskarray
+ )
+
local -x PYTEST_DISABLE_PLUGIN_AUTOLOAD=1
if ! has_version ">=dev-python/scipy-1.4[${PYTHON_USEDEP}]" ; then