Adding metadata

3 files changed, 12 insertions, 197 deletions

diff --git a/dev-python/scipy/Manifest b/dev-python/scipy/Manifest
index 19bf62431d3d..048cf3dcb968 100644
--- a/dev-python/scipy/Manifest
+++ b/dev-python/scipy/Manifest
@@ -1,4 +1,4 @@
-DIST scipy-1.16.2.tar.gz 30580599 BLAKE2B aec4039fe5798365fbe5147a4d6acea61e408ad0a533da4a3602e3c03a5a495f693b9b998a0417524621e6414e3bc847339364d6536e6b489cff43931253c87d SHA512 6b5c1ab6236af5d40850f8b77f8d47494dda9bccf814908ba306b4b3710359d18eb0dd880c05dc4f334cc298d0a2d54d271d5cd5b519190fcfba58524b1d8dce
 DIST scipy-1.16.3.tar.gz 30597883 BLAKE2B ba026013ecfdc9329ec6140bf32f8de61e141b645c5a35ad5dc38276ac4df296fce0091675177daaf3d65f2cb797783365df306397e1643d50508e343daaa325 SHA512 7386670d2be598f46425a5f2ac0194748c83ec006be0b0395a850a613bc12731669469aefe503c9db2521aba956325d44e7a75fa82e4c1e629202cafd1966aa5
 DIST scipy-1.17.0.tar.gz 30396830 BLAKE2B c1e26583f26b969eca6c6559a0a8cc02da857dd0e02ebc871f5c3cde8e6feadd845b802ca6b2386d7de6bfbff724b97fcdd396679bd037b5d15f69b492a4043f SHA512 299339cf7885ae6ad81bb29ab1a9128c1e7baef387e64e03a5ca784c14f08de1fe58c8d58b25c76c9068b09d8d97fc8b38d2e03922f0f8ada4e5d00910d56dae
+DIST scipy-1.17.1.tar.gz 30573822 BLAKE2B 2e01e534131819f542630a6664ef1cae971e4ec1566d9caca8cc77a1d8c0915574c8094e8f1efe84f1ecf016ca868f6b26283cf5eff6eb576242857c993f0cc4 SHA512 c2930d9be072057eb25394d6bee7fbe504f1b7c442b5393641ab3ff6bba590d4a76d240eb3a2ef58891bcb449af847de056a8957c591caa8fbf496ce9ce5a9e5
 DIST scipy-html-1.16.2.zip 71516578 BLAKE2B 244537f823e39b52e0b00df63f8f36088f5ef17e365f98415d1573883e9c0eee3f4376b149eaea9b70b34b34a294aeafae9f849050ab8161a8ecdb24172c2876 SHA512 15df0c7211cc4d32007b54015efc17edd1c9b23e8892b748ab946c5c1ea3e1840a00d9005b585cc0c6416bcef1e490f54ff919d3c0140ed95d8e469836751d5c
diff --git a/dev-python/scipy/scipy-1.16.2-r1.ebuild b/dev-python/scipy/scipy-1.16.2-r1.ebuild
deleted file mode 100644
index f8fa2ef5aded..000000000000
--- a/dev-python/scipy/scipy-1.16.2-r1.ebuild
+++ /dev/null
@@ -1,183 +0,0 @@
-# Copyright 1999-2025 Gentoo Authors
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=8
-
-FORTRAN_NEEDED=fortran
-DISTUTILS_EXT=1
-DISTUTILS_USE_PEP517=meson-python
-PYTHON_COMPAT=( python3_{10..14} )
-PYTHON_REQ_USE="threads(+)"
-
-inherit flag-o-matic fortran-2 distutils-r1
-
-DESCRIPTION="Scientific algorithms library for Python"
-HOMEPAGE="
-	https://scipy.org/
-	https://github.com/scipy/scipy/
-	https://pypi.org/project/scipy/
-"
-
-if [[ ${PV} == *9999* ]] ; then
-	inherit git-r3
-
-	# Need submodules, so git for now.
-	EGIT_REPO_URI="https://github.com/scipy/scipy"
-	EGIT_BRANCH="maintenance/$(ver_cut 1-2).x"
-	EGIT_SUBMODULES=( '*' )
-else
-	inherit pypi
-
-	# Upstream is often behind with doc updates
-	DOC_PV=${PV}
-
-	SRC_URI+="
-		doc? (
-			https://docs.scipy.org/doc/${PN}-${DOC_PV}/${PN}-html-${DOC_PV}.zip
-		)
-	"
-
-	if [[ ${PV} != *rc* ]] ; then
-		KEYWORDS="amd64 arm arm64 ~loong ~ppc ppc64 ~riscv ~s390 ~sparc x86"
-	fi
-fi
-
-LICENSE="BSD LGPL-2"
-SLOT="0"
-IUSE="doc +fortran test-rust"
-
-# pythran is needed in both BDEPEND (for /usr/bin/pythran) and in DEPEND
-# to actually compile code generated by pythran (headers and such needed).
-#
-# umfpack is technically optional but it's preferred to have it available.
-COMMON_DEPEND="
-	>=dev-python/numpy-1.23.5:=[lapack,${PYTHON_USEDEP}]
-	>=media-libs/qhull-2020.2:=
-	virtual/cblas
-	>=virtual/lapack-3.8
-"
-# Only boost.math is used, and meson.build doesn't even look up specific boost modules.
-DEPEND="
-	${COMMON_DEPEND}
-	>=dev-libs/boost-1.88.0
-"
-RDEPEND="
-	${COMMON_DEPEND}
-	dev-python/pillow[${PYTHON_USEDEP}]
-"
-DEPEND+="
-	fortran? (
-		>=dev-python/pythran-0.16.0[${PYTHON_USEDEP}]
-	)
-"
-BDEPEND="
-	dev-lang/swig
-	>=dev-python/cython-3.0.8[${PYTHON_USEDEP}]
-	>=dev-python/meson-python-0.15.0[${PYTHON_USEDEP}]
-	>=dev-python/pybind11-2.13.2[${PYTHON_USEDEP}]
-	>=dev-python/pytest-8.0.0[${PYTHON_USEDEP}]
-	>=dev-build/meson-1.5.0
-	!kernel_Darwin? ( dev-util/patchelf )
-	virtual/pkgconfig
-	doc? ( app-arch/unzip )
-	fortran? (
-		>=dev-python/pythran-0.16.0[${PYTHON_USEDEP}]
-	)
-	test-rust? (
-		dev-python/pooch[${PYTHON_USEDEP}]
-	)
-"
-
-EPYTEST_PLUGINS=( hypothesis )
-EPYTEST_XDIST=1
-distutils_enable_tests pytest
-
-src_unpack() {
-	default
-
-	if use doc; then
-		unzip -qo "${DISTDIR}"/${PN}-html-${DOC_PV}.zip -d html || die
-	fi
-}
-
-src_prepare() {
-	distutils-r1_src_prepare
-
-	# unpin system dependencies
-	sed -i -e "s@version : '@&>=@" meson.build || die
-}
-
-python_configure_all() {
-	DISTUTILS_ARGS=(
-		-Dblas=blas
-		-Dlapack=lapack
-		-Duse-pythran=$(usex fortran true false)
-		-Duse-system-libraries=all
-	)
-
-	# https://bugs.gentoo.org/932721
-	has_version '>=dev-python/numpy-2.0.0' && filter-lto
-}
-
-python_test() {
-	# We run tests in parallel, so avoid having n^2 threads in lapack
-	# tests.
-	local -x BLIS_NUM_THREADS=1
-	local -x MKL_NUM_THREADS=1
-	local -x OMP_NUM_THREADS=1
-	local -x OPENBLAS_NUM_THREADS=1
-
-	cd "${BUILD_DIR}/install$(python_get_sitedir)" || die
-
-	local EPYTEST_DESELECT=(
-		# Network
-		scipy/datasets/tests/test_data.py::TestDatasets::test_existence_all
-		scipy/datasets/tests/test_data.py::TestDatasets::test_ascent
-		scipy/datasets/tests/test_data.py::TestDatasets::test_face
-		scipy/datasets/tests/test_data.py::TestDatasets::test_electrocardiogram
-
-		# Crashes with assertion, not a regression
-		# https://github.com/scipy/scipy/issues/19321
-		scipy/signal/tests/test_signaltools.py::test_lfilter_bad_object
-
-		# Awfully slow tests
-		scipy/interpolate/tests/test_bsplines.py::TestBatch::test_batch
-		scipy/linalg/tests/test_basic.py::TestLstsq::test_random_complex_exact
-		scipy/sparse/linalg/_eigen/tests/test_svds.py::test_small_sigma_sparse
-
-		# TODO: minor precision errors
-		'scipy/linalg/tests/test_batch.py::TestBatch::test_solve[float32-bdim2]'
-		'scipy/linalg/tests/test_batch.py::TestBatch::test_lu_solve[float32-bdim2]'
-		'scipy/stats/tests/test_continuous.py::TestDistributions::test_funcs[cdf-methods11-x-Normal]['
-
-		# Crashes, probably too big
-		'scipy/interpolate/tests/test_fitpack2.py::TestRectBivariateSpline::test_spline_large_2d_maxit'
-	)
-	local EPYTEST_IGNORE=()
-
-	if ! has_version -b "dev-python/pooch[${PYTHON_USEDEP}]" ; then
-		EPYTEST_IGNORE+=(
-			scipy/datasets/tests/test_data.py
-		)
-	fi
-
-	case ${EPYTHON} in
-		pypy3*)
-			EPYTEST_DESELECT+=(
-				# TODO
-				scipy/special/tests/test_data.py::test_boost
-				scipy/_lib/tests/test_ccallback.py::test_callbacks
-			)
-			;;
-	esac
-
-	# avoid other stuff being multithreaded when using xdist
-	local -x PYTHON_CPU_COUNT=1
-	epytest scipy
-}
-
-python_install_all() {
-	use doc && local HTML_DOCS=( "${WORKDIR}"/html/. )
-
-	distutils-r1_python_install_all
-}
diff --git a/dev-python/scipy/scipy-1.16.2-r2.ebuild b/dev-python/scipy/scipy-1.17.1.ebuild
index 9421651a02d9..bc4de302cb27 100644
--- a/dev-python/scipy/scipy-1.16.2-r2.ebuild
+++ b/dev-python/scipy/scipy-1.17.1.ebuild
@@ -1,4 +1,4 @@
-# Copyright 1999-2025 Gentoo Authors
+# Copyright 1999-2026 Gentoo Authors
 # Distributed under the terms of the GNU General Public License v2
 
 EAPI=8
@@ -29,7 +29,7 @@ else
 	inherit pypi
 
 	# Upstream is often behind with doc updates
-	DOC_PV=${PV}
+	DOC_PV=1.16.2
 
 	SRC_URI+="
 		doc? (
@@ -37,7 +37,7 @@ else
 		)
 	"
 
-	if [[ ${PV} != *rc* ]] ; then
+	if [[ ${PV} != *rc* ]]; then
 		KEYWORDS="~amd64 ~arm ~arm64 ~loong ~ppc ~ppc64 ~riscv ~s390 ~sparc ~x86"
 	fi
 fi
@@ -59,7 +59,7 @@ COMMON_DEPEND="
 # Only boost.math is used, and meson.build doesn't even look up specific boost modules.
 DEPEND="
 	${COMMON_DEPEND}
-	>=dev-libs/boost-1.88.0
+	>=dev-libs/boost-1.89.0
 "
 RDEPEND="
 	${COMMON_DEPEND}
@@ -161,15 +161,13 @@ python_test() {
 		)
 	fi
 
-	case ${EPYTHON} in
-		pypy3*)
-			EPYTEST_DESELECT+=(
-				# TODO
-				scipy/special/tests/test_data.py::test_boost
-				scipy/_lib/tests/test_ccallback.py::test_callbacks
-			)
-			;;
-	esac
+	if has_version -b "sys-libs/zlib-ng[compat]"; then
+		EPYTEST_DESELECT+=(
+			# https://github.com/scipy/scipy/issues/23185
+			scipy/io/matlab/tests/test_streams.py::TestZlibInputStream::test_all_data_read_bad_checksum
+			scipy/io/matlab/tests/test_streams.py::TestZlibInputStream::test_all_data_read_overlap
+		)
+	fi
 
 	# avoid other stuff being multithreaded when using xdist
 	local -x PYTHON_CPU_COUNT=1