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authorLiguros - Gitlab CI/CD [master] <gitlab@liguros.net>2021-01-17 23:35:33 +0000
committerLiguros - Gitlab CI/CD [master] <gitlab@liguros.net>2021-01-17 23:35:33 +0000
commit8e8120eabdd28020aa69c7a60505cce2edd20adc (patch)
tree061bf0acdc672720e0bc3a2d575f67d25aedb2d8 /dev-python/pyamg
parentc16790af2c9b4cbc38e565d4311252193ff85484 (diff)
downloadbaldeagleos-repo-21.1.2.tar.gz
baldeagleos-repo-21.1.2.tar.xz
baldeagleos-repo-21.1.2.zip
Updating liguros repo21.1.2
Diffstat (limited to 'dev-python/pyamg')
-rw-r--r--dev-python/pyamg/Manifest2
-rw-r--r--dev-python/pyamg/files/pyamg-4.0.0-test.patch14
-rw-r--r--dev-python/pyamg/pyamg-4.0.0.ebuild (renamed from dev-python/pyamg/pyamg-3.2.1-r1.ebuild)23
3 files changed, 24 insertions, 15 deletions
diff --git a/dev-python/pyamg/Manifest b/dev-python/pyamg/Manifest
index d3ed6ae9df15..a1a195d67593 100644
--- a/dev-python/pyamg/Manifest
+++ b/dev-python/pyamg/Manifest
@@ -1 +1 @@
-DIST pyamg-3.2.1.tar.gz 765723 BLAKE2B 72c59c0fe93363f73d8ba4c6297920dd1ca8406b048cf0357baec5f2390bdb524421a35ef65e790be45b543e9e162067ee8f8f09327b464a4bc5c9cec368b003 SHA512 6be0dd068417389934ce97813321367920abf6f9f5e94ce2df8bd796edc797cedd492c9153b62466f7d68055a05821447dcf21578ccdfe3294766a49a9ac220e
+DIST pyamg-4.0.0.tar.gz 717171 BLAKE2B 16483d829e8a938359827ca8ebe3093c890685244125576e05220910b66e9aeec278472134d10c589e58dfbd363930cdd7ae13d16c9b9d54c1bd5250e66f4677 SHA512 cdd27834c12ef18f023e78b5b946c06bc2c35f73cf65fc4c76da2fab75f23466e6c1a4b3dccb8506be3ada7e0bafda38122d3d7315deebc7959d2e5300d9add1
diff --git a/dev-python/pyamg/files/pyamg-4.0.0-test.patch b/dev-python/pyamg/files/pyamg-4.0.0-test.patch
new file mode 100644
index 000000000000..316d0a2baad4
--- /dev/null
+++ b/dev-python/pyamg/files/pyamg-4.0.0-test.patch
@@ -0,0 +1,14 @@
+Backported from: https://github.com/pyamg/pyamg/commit/6f5e549e6105e18cfff9bf4b5f1834d081fa4510
+Author: Luke Olson
+--- a/pyamg/aggregation/tests/test_smooth.py
++++ b/pyamg/aggregation/tests/test_smooth.py
+@@ -485,6 +485,9 @@ class TestEnergyMin(TestCase):
+ Bc = ml.levels[1].B
+ P = ml.levels[0].P.tocsr()
+
++ T.eliminate_zeros()
++ P.eliminate_zeros()
++
+ # P should preserve B in its range, wherever P
+ # has enough nonzeros
+ mask = ((P.indptr[1:] - P.indptr[:-1]) >= B.shape[1])
diff --git a/dev-python/pyamg/pyamg-3.2.1-r1.ebuild b/dev-python/pyamg/pyamg-4.0.0.ebuild
index 85993b45605c..27c1aecedaa5 100644
--- a/dev-python/pyamg/pyamg-3.2.1-r1.ebuild
+++ b/dev-python/pyamg/pyamg-4.0.0.ebuild
@@ -3,8 +3,8 @@
EAPI=7
+DISTUTILS_USE_SETUPTOOLS=bdepend
PYTHON_COMPAT=( python3_{6,7,8,9,10} )
-
inherit distutils-r1
DESCRIPTION="Algebraic multigrid solvers in Python"
@@ -13,20 +13,15 @@ SRC_URI="mirror://pypi/${PN:0:1}/${PN}/${P}.tar.gz"
LICENSE="BSD"
SLOT="0"
-KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux"
-IUSE="test"
-RESTRICT="!test? ( test )"
+KEYWORDS="~amd64 ~x86"
RDEPEND="
dev-python/numpy[${PYTHON_USEDEP}]
- dev-python/scipy[${PYTHON_USEDEP}]
-"
-DEPEND="${RDEPEND}
- test? ( dev-python/nose[${PYTHON_USEDEP}] )
-"
+ dev-python/pybind11[${PYTHON_USEDEP}]
+ dev-python/scipy[${PYTHON_USEDEP}]"
+# cannot be enabled by "distutils_enable_tests pytest"
+BDEPEND="test? ( dev-python/pytest[${PYTHON_USEDEP}] )"
+
+distutils_enable_tests setup.py
-python_test() {
- distutils_install_for_testing
- cd "${T}" || die # need to be away source directory
- nosetests --verbose pyamg || die
-}
+PATCHES=( "${FILESDIR}"/${P}-test.patch )