Updating liguros repo

4 files changed, 177 insertions, 0 deletions

diff --git a/dev-perl/Bio-Graphics/Bio-Graphics-2.390.0.ebuild b/dev-perl/Bio-Graphics/Bio-Graphics-2.390.0.ebuild
new file mode 100644
index 000000000000..00d3935f6fcb
--- /dev/null
+++ b/dev-perl/Bio-Graphics/Bio-Graphics-2.390.0.ebuild
@@ -0,0 +1,25 @@
+# Copyright 1999-2017 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+
+EAPI=5
+
+MODULE_AUTHOR=LDS
+MODULE_VERSION=2.39
+inherit perl-module
+
+DESCRIPTION="Generate images from Bio::Seq objects for visualization purposes"
+
+SLOT="0"
+KEYWORDS="~amd64 ~x86"
+IUSE=""
+
+RDEPEND="
+	>=dev-perl/GD-2.300.0
+	>=dev-perl/Statistics-Descriptive-2.600.0
+	>=sci-biology/bioperl-1.5.9.1
+	dev-perl/CGI
+"
+DEPEND="${RDEPEND}
+	>=dev-perl/Module-Build-0.420.0
+"
+SRC_TEST=do
diff --git a/dev-perl/Bio-Graphics/Bio-Graphics-2.400.0.ebuild b/dev-perl/Bio-Graphics/Bio-Graphics-2.400.0.ebuild
new file mode 100644
index 000000000000..c76516e2a492
--- /dev/null
+++ b/dev-perl/Bio-Graphics/Bio-Graphics-2.400.0.ebuild
@@ -0,0 +1,25 @@
+# Copyright 1999-2018 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+
+EAPI=6
+
+DIST_AUTHOR=CJFIELDS
+DIST_VERSION=2.40
+inherit perl-module
+
+DESCRIPTION="Generate images from Bio::Seq objects for visualization purposes"
+
+SLOT="0"
+KEYWORDS="~amd64 ~x86"
+IUSE=""
+
+RDEPEND="
+	dev-perl/CGI
+	>=dev-perl/GD-2.300.0
+	>=dev-perl/Statistics-Descriptive-2.600.0
+	<=sci-biology/bioperl-1.6.924
+	>=sci-biology/bioperl-1.5.9.1
+"
+DEPEND="${RDEPEND}
+	>=dev-perl/Module-Build-0.420.0
+"
diff --git a/dev-perl/Bio-Graphics/Manifest b/dev-perl/Bio-Graphics/Manifest
new file mode 100644
index 000000000000..c83fbe3d74e6
--- /dev/null
+++ b/dev-perl/Bio-Graphics/Manifest
@@ -0,0 +1,2 @@
+DIST Bio-Graphics-2.39.tar.gz 1139511 BLAKE2B 239164b45f0cb458df60e9c82c0900dedc86fd0ae8d0fd00b2f3bd6ae43dd801b27615153d8f5f8ac9f1db341a69fbecc431bb5da8460cc9cb61b5e45a5c32ac SHA512 4119c56a125df67a613833c06d7db94be7f19c39fcf908eb52c403e70652c04d91a3b7de768e2465423bff69dd900cb45f1044ed673eb6228a8ad7516a35471f
+DIST Bio-Graphics-2.40.tar.gz 1105973 BLAKE2B 9b2d5d8406155ba65b5f51fe5f0d832383640985bde125e31784b102789bfc288565714f216ff9bcec0a7d25ff9874c974d6037b21f51d11f48a992807f7edf5 SHA512 a575ced7b5e59ad0f2b81ecc44f441760003b80bbe8f4f2593d4f2258d967a537ffbe35b031c8fda94c0c2e64a0687739fc789a05edfc2a0b38e336f037f21df
diff --git a/dev-perl/Bio-Graphics/metadata.xml b/dev-perl/Bio-Graphics/metadata.xml
new file mode 100644
index 000000000000..d7948cee9d02
--- /dev/null
+++ b/dev-perl/Bio-Graphics/metadata.xml
@@ -0,0 +1,125 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
+<pkgmetadata>
+  <maintainer type="project">
+    <email>sci@gentoo.org</email>
+    <name>Gentoo Science Project</name>
+  </maintainer>
+  <maintainer type="project">
+    <email>perl@gentoo.org</email>
+    <name>Gentoo Perl Project</name>
+  </maintainer>
+  <upstream>
+    <remote-id type="cpan">Bio-Graphics</remote-id>
+    <remote-id type="cpan-module">Bio::Graphics</remote-id>
+    <remote-id type="cpan-module">Bio::Graphics::ConfiguratorI</remote-id>
+    <remote-id type="cpan-module">Bio::Graphics::DrawTransmembrane</remote-id>
+    <remote-id type="cpan-module">Bio::Graphics::Feature</remote-id>
+    <remote-id type="cpan-module">Bio::Graphics::FeatureBase</remote-id>
+    <remote-id type="cpan-module">Bio::Graphics::FeatureDir</remote-id>
+    <remote-id type="cpan-module">Bio::Graphics::FeatureFile</remote-id>
+    <remote-id type="cpan-module">Bio::Graphics::FeatureFile::Iterator</remote-id>
+    <remote-id type="cpan-module">Bio::Graphics::FileSplitter</remote-id>
+    <remote-id type="cpan-module">Bio::Graphics::Glyph</remote-id>
+    <remote-id type="cpan-module">Bio::Graphics::Glyph::Factory</remote-id>
+    <remote-id type="cpan-module">Bio::Graphics::Glyph::alignment</remote-id>
+    <remote-id type="cpan-module">Bio::Graphics::Glyph::allele_tower</remote-id>
+    <remote-id type="cpan-module">Bio::Graphics::Glyph::anchored_arrow</remote-id>
+    <remote-id type="cpan-module">Bio::Graphics::Glyph::arrow</remote-id>
+    <remote-id type="cpan-module">Bio::Graphics::Glyph::box</remote-id>
+    <remote-id type="cpan-module">Bio::Graphics::Glyph::broken_line</remote-id>
+    <remote-id type="cpan-module">Bio::Graphics::Glyph::cds</remote-id>
+    <remote-id type="cpan-module">Bio::Graphics::Glyph::christmas_arrow</remote-id>
+    <remote-id type="cpan-module">Bio::Graphics::Glyph::cross</remote-id>
+    <remote-id type="cpan-module">Bio::Graphics::Glyph::crossbox</remote-id>
+    <remote-id type="cpan-module">Bio::Graphics::Glyph::dashed_line</remote-id>
+    <remote-id type="cpan-module">Bio::Graphics::Glyph::diamond</remote-id>
+    <remote-id type="cpan-module">Bio::Graphics::Glyph::dna</remote-id>
+    <remote-id type="cpan-module">Bio::Graphics::Glyph::dot</remote-id>
+    <remote-id type="cpan-module">Bio::Graphics::Glyph::dumbbell</remote-id>
+    <remote-id type="cpan-module">Bio::Graphics::Glyph::ellipse</remote-id>
+    <remote-id type="cpan-module">Bio::Graphics::Glyph::ex</remote-id>
+    <remote-id type="cpan-module">Bio::Graphics::Glyph::extending_arrow</remote-id>
+    <remote-id type="cpan-module">Bio::Graphics::Glyph::fb_shmiggle</remote-id>
+    <remote-id type="cpan-module">Bio::Graphics::Glyph::fixedwidth</remote-id>
+    <remote-id type="cpan-module">Bio::Graphics::Glyph::flag</remote-id>
+    <remote-id type="cpan-module">Bio::Graphics::Glyph::gene</remote-id>
+    <remote-id type="cpan-module">Bio::Graphics::Glyph::generic</remote-id>
+    <remote-id type="cpan-module">Bio::Graphics::Glyph::graded_segments</remote-id>
+    <remote-id type="cpan-module">Bio::Graphics::Glyph::group</remote-id>
+    <remote-id type="cpan-module">Bio::Graphics::Glyph::hat</remote-id>
+    <remote-id type="cpan-module">Bio::Graphics::Glyph::heat_map</remote-id>
+    <remote-id type="cpan-module">Bio::Graphics::Glyph::heat_map_ideogram</remote-id>
+    <remote-id type="cpan-module">Bio::Graphics::Glyph::heterogeneous_segments</remote-id>
+    <remote-id type="cpan-module">Bio::Graphics::Glyph::hidden</remote-id>
+    <remote-id type="cpan-module">Bio::Graphics::Glyph::hybrid_plot</remote-id>
+    <remote-id type="cpan-module">Bio::Graphics::Glyph::ideogram</remote-id>
+    <remote-id type="cpan-module">Bio::Graphics::Glyph::image</remote-id>
+    <remote-id type="cpan-module">Bio::Graphics::Glyph::lightning</remote-id>
+    <remote-id type="cpan-module">Bio::Graphics::Glyph::line</remote-id>
+    <remote-id type="cpan-module">Bio::Graphics::Glyph::merge_parts</remote-id>
+    <remote-id type="cpan-module">Bio::Graphics::Glyph::merged_alignment</remote-id>
+    <remote-id type="cpan-module">Bio::Graphics::Glyph::minmax</remote-id>
+    <remote-id type="cpan-module">Bio::Graphics::Glyph::operon</remote-id>
+    <remote-id type="cpan-module">Bio::Graphics::Glyph::oval</remote-id>
+    <remote-id type="cpan-module">Bio::Graphics::Glyph::pairplot</remote-id>
+    <remote-id type="cpan-module">Bio::Graphics::Glyph::pentagram</remote-id>
+    <remote-id type="cpan-module">Bio::Graphics::Glyph::phylo_align</remote-id>
+    <remote-id type="cpan-module">Bio::Graphics::Glyph::pinsertion</remote-id>
+    <remote-id type="cpan-module">Bio::Graphics::Glyph::point_glyph</remote-id>
+    <remote-id type="cpan-module">Bio::Graphics::Glyph::primers</remote-id>
+    <remote-id type="cpan-module">Bio::Graphics::Glyph::processed_transcript</remote-id>
+    <remote-id type="cpan-module">Bio::Graphics::Glyph::protein</remote-id>
+    <remote-id type="cpan-module">Bio::Graphics::Glyph::ragged_ends</remote-id>
+    <remote-id type="cpan-module">Bio::Graphics::Glyph::rainbow_gene</remote-id>
+    <remote-id type="cpan-module">Bio::Graphics::Glyph::read_pair</remote-id>
+    <remote-id type="cpan-module">Bio::Graphics::Glyph::redgreen_box</remote-id>
+    <remote-id type="cpan-module">Bio::Graphics::Glyph::redgreen_segment</remote-id>
+    <remote-id type="cpan-module">Bio::Graphics::Glyph::repeating_shape</remote-id>
+    <remote-id type="cpan-module">Bio::Graphics::Glyph::rndrect</remote-id>
+    <remote-id type="cpan-module">Bio::Graphics::Glyph::ruler_arrow</remote-id>
+    <remote-id type="cpan-module">Bio::Graphics::Glyph::saw_teeth</remote-id>
+    <remote-id type="cpan-module">Bio::Graphics::Glyph::scale</remote-id>
+    <remote-id type="cpan-module">Bio::Graphics::Glyph::segmented_keyglyph</remote-id>
+    <remote-id type="cpan-module">Bio::Graphics::Glyph::segments</remote-id>
+    <remote-id type="cpan-module">Bio::Graphics::Glyph::smoothing</remote-id>
+    <remote-id type="cpan-module">Bio::Graphics::Glyph::so_transcript</remote-id>
+    <remote-id type="cpan-module">Bio::Graphics::Glyph::span</remote-id>
+    <remote-id type="cpan-module">Bio::Graphics::Glyph::spectrogram</remote-id>
+    <remote-id type="cpan-module">Bio::Graphics::Glyph::splice_site</remote-id>
+    <remote-id type="cpan-module">Bio::Graphics::Glyph::stackedplot</remote-id>
+    <remote-id type="cpan-module">Bio::Graphics::Glyph::ternary_plot</remote-id>
+    <remote-id type="cpan-module">Bio::Graphics::Glyph::text_in_box</remote-id>
+    <remote-id type="cpan-module">Bio::Graphics::Glyph::three_letters</remote-id>
+    <remote-id type="cpan-module">Bio::Graphics::Glyph::tic_tac_toe</remote-id>
+    <remote-id type="cpan-module">Bio::Graphics::Glyph::toomany</remote-id>
+    <remote-id type="cpan-module">Bio::Graphics::Glyph::topoview</remote-id>
+    <remote-id type="cpan-module">Bio::Graphics::Glyph::trace</remote-id>
+    <remote-id type="cpan-module">Bio::Graphics::Glyph::track</remote-id>
+    <remote-id type="cpan-module">Bio::Graphics::Glyph::transcript</remote-id>
+    <remote-id type="cpan-module">Bio::Graphics::Glyph::transcript2</remote-id>
+    <remote-id type="cpan-module">Bio::Graphics::Glyph::translation</remote-id>
+    <remote-id type="cpan-module">Bio::Graphics::Glyph::triangle</remote-id>
+    <remote-id type="cpan-module">Bio::Graphics::Glyph::two_bolts</remote-id>
+    <remote-id type="cpan-module">Bio::Graphics::Glyph::vista_plot</remote-id>
+    <remote-id type="cpan-module">Bio::Graphics::Glyph::wave</remote-id>
+    <remote-id type="cpan-module">Bio::Graphics::Glyph::weighted_arrow</remote-id>
+    <remote-id type="cpan-module">Bio::Graphics::Glyph::whiskerplot</remote-id>
+    <remote-id type="cpan-module">Bio::Graphics::Glyph::wiggle_box</remote-id>
+    <remote-id type="cpan-module">Bio::Graphics::Glyph::wiggle_data</remote-id>
+    <remote-id type="cpan-module">Bio::Graphics::Glyph::wiggle_density</remote-id>
+    <remote-id type="cpan-module">Bio::Graphics::Glyph::wiggle_whiskers</remote-id>
+    <remote-id type="cpan-module">Bio::Graphics::Glyph::wiggle_xyplot</remote-id>
+    <remote-id type="cpan-module">Bio::Graphics::Glyph::xyplot</remote-id>
+    <remote-id type="cpan-module">Bio::Graphics::Layout</remote-id>
+    <remote-id type="cpan-module">Bio::Graphics::Layout::Contour</remote-id>
+    <remote-id type="cpan-module">Bio::Graphics::Math</remote-id>
+    <remote-id type="cpan-module">Bio::Graphics::Panel</remote-id>
+    <remote-id type="cpan-module">Bio::Graphics::Pictogram</remote-id>
+    <remote-id type="cpan-module">Bio::Graphics::RendererI</remote-id>
+    <remote-id type="cpan-module">Bio::Graphics::Util</remote-id>
+    <remote-id type="cpan-module">Bio::Graphics::Wiggle</remote-id>
+    <remote-id type="cpan-module">Bio::Graphics::Wiggle::Loader</remote-id>
+  </upstream>
+	<origin>gentoo-staging</origin>
+</pkgmetadata>